Hi Nancy,

for the list of tools on Main that were installed from Tool Shed please look at https://github.com/galaxyproject/usegalaxy-playbook/blob/master/env/main/files/galaxy/var/shed_tool_conf.xml

The tool_conf.xml.main file only consists of tools that are not from the Tool Shed, which is a minority nowadays.


On Mon, Apr 30, 2018 at 9:57 AM Nancy Ide <ide@vassar.edu> wrote:

I’m trying to include some of the tools available from usegalaxy.org in the tool menu of our instance of Galaxy. When I look at the list of tools in the Galaxy tool_conf.xml.main file, it does not seem to line up with what you see in the menu at usegalaxy.org. I’ve searched through various versions etc. on GitHub, but no luck—they all seem to be identical and do not seem to correspond with the menu at usegalaxy.org (I am looking specifically at the Text Manipulation part of the menu). Any clues on where I should look?

Nancy Ide


Nancy Ide
Professor of Computer Science

Department of Computer Science
Vassar College
Poughkeepsie, New York 12604-0520

tel: (+1 845) 437 5988
fax: (+1 845) 437 7498
email: ide@cs.vassar.edu


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