Dear John, dear Curtis, and all all that is required to fix my current issue is that the files show up in the 'Upload File' tool form in alphabetical order. I assume that at some point an 'ls' command is done on the users' ftp home folder. The result of that could possibly be stored in a hash of some sort, which could explain why the order is randomised when the files come back out to go on the form. But I might be wrong. Of course a better but more involved solution would be if the 'Files uploaded via FTP' table was sortable, e.g. by clicking on the table headers. Any idea where I might find the code that populates this table? Thanks a lot for your help. Cheers Ulf On 17/12/13 22:31, Curtis Hendrickson (Campus) wrote:
John,
I can't speak for Ulf, but a more general solution would be to allow sorting by a standard unix SORT set keys. That would allow things like - sort by the sample ID after the 3rd dash, then by the read direction. -t - -k1,1n -k2,2r # http://unixhelp.ed.ac.uk/CGI/man-cgi?sort
Regards, Curtis
PS - granted simple filename sort is a good place to start and a lot better than nothing. Date sort is often useful, too.
-----Original Message----- From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of John Chilton Sent: Tuesday, December 17, 2013 4:03 PM To: Ulf Schaefer Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] sort list of ftp uploaded files
If Galaxy just sorted these files alphabetically before display/import would that fix your problem? Or do your users need to be able to modify the order?
-John
On Mon, Dec 16, 2013 at 9:19 AM, Ulf Schaefer <Ulf.Schaefer@phe.gov.uk> wrote:
Dear all
Is there a way to sort the list of files that a user has uploaded via FTP? Currently they appear on the form of the tool 'Upload File' in random order it seems. There is not much documentation on the <param type="ftpfile" /> tag unfortunately.
If the user just selects all files they end up in his/her history in the same random order, which causes a slight inconvenience when using these files as paired multiple input for a workflow.
The obvious work-around is to put the files into the history one pair at a time, but this becomes a bit onerous for larger number of files.
Thanks a lot for your help.
Cheers Ulf
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