Same
thing:
[aspunde@ilmnhw-biolin10
galaxy-dist]$ python ./scripts/fetch_eggs.py
Fetched
http://eggs.g2.bx.psu.edu/Babel/Babel-0.9.4-py2.6.egg
Fetched
http://eggs.g2.bx.psu.edu/docutils/docutils-0.7-py2.6.egg
Fetched
http://eggs.g2.bx.psu.edu/pysqlite/pysqlite-2.5.6_3.6.17_static-py2.6-linux-x86_64-ucs2.egg
Fetched
http://eggs.g2.bx.psu.edu/GeneTrack/GeneTrack-2.0.0_beta_1_dev_48da9e998f0caf01c5be731e926f4b0481f658f0-py2.6.egg
One or
more of the python eggs necessary to run Galaxy couldn't be
downloaded
automatically. You can try building them by hand (all
at
once) with:
python scripts/scramble.py
Or
individually:
python
scripts/scramble.py Babel
python scripts/scramble.py docutils
python scripts/scramble.py GeneTrack
From: Spunde, Alex
Sent: Monday, May 16, 2011 10:56 AM
To: 'galaxy-dev@bx.psu.edu'
Subject: egg install failure: docutils, GeneTrack
Hi
Trying to install Galaxy on
local machine, using hg:
hg
clone http://bitbucket.org/galaxy/galaxy-dist
Get error messages for two eggs:
Scrambling
the following eggs failed:
docutils
GeneTrack
Here is more details for
docutils (practically same for GeneTrack):
[aspunde@ilmnhw-biolin10
galaxy-dist]$ python scripts/scramble.py docutils
fetch_one():
Using existing source, remove to download again:
/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/archives/docutils-0.7.tar.gz
unpack_source():
Removing old build directory at:
/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/py2.6/docutils
unpack_source():
Unpacked to:
/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/py2.6/docutils
copy_build_script():
Using build script
/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/scripts/generic.py
run_scramble_script():
Beginning build
run_scramble_script():
Executing in /escher/bioinfoHW/opensource/Galaxy/galaxy-dist/scripts/scramble/build/py2.6/docutils:
/escher/bioinfoHW/opensource/lib/bin/python scramble.py
Traceback
(most recent call last):
File "scramble.py", line 29, in <module>
execfile( "setup.py", globals(), locals() )
IOError: [Errno 2] No such file or
directory: 'setup.py'
Traceback
(most recent call last):
File "scripts/scramble.py", line 44, in <module>
egg.scramble()
File
"/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py",
line 57, in scramble
self.run_scramble_script()
File
"/escher/bioinfoHW/opensource/Galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py",
line 206, in run_scramble_script
raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % (
sys._getframe().f_code.co_name, self.name, self.version ) )
galaxy.eggs.scramble.ScrambleFailure:
run_scramble_script(): Egg build failed for docutils 0.7
Here
is basic info about system:
[aspunde@ilmnhw-biolin10
galaxy-dist]$ python --version
Python
2.6
$ hg
--version
Mercurial
Distributed SCM (version 1.8.3)
$
uname -a
Linux
ilmnhw-biolin10.hwus.illumina.com 2.6.18-164.15.1.el5 #1 SMP Wed Mar 17
11:30:06 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
Thanks
Alex
Spunde