Hi I am a developer for a group. I am having a problem with local installation of galaxy. The platform I am using is: $ uname -o GNU/Linux $ uname -i x86_64 $ uname -v #1 SMP Tue Jul 22 18:01:05 EDT 2008 $ uname -r 2.6.9-78.0.1.ELsmp Here’s what I did: $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy_dist grep: http://www.bx.psu.edu/hg/galaxy: No such file or directory grep: galaxy_dist: No such file or directory I cut and pasted from your wiki page, and I assume there is no typo... $ tar xzf galaxy-dist-tip.tar.gz gzip: stdin: unexpected end of file tar: Unexpected EOF in archive tar: Unexpected EOF in archive tar: Error is not recoverable: exiting now $ gunzip galaxy-dist-tip.tar.gz gunzip: galaxy-dist-tip.tar.gz: unexpected end of file I guess there is something wrong with this gzipped tar file... $ rm galaxy-dist-tip.tar.gz $ /bin/rm -rf galaxy-dist Try it with bz2 file... $ bunzip2 galaxy-dist-tip.tar.bz2 $ tar xf galaxy-dist-tip.tar $ echo $? 0 $ cd galaxy-dist $ sh run.sh <...lots of lines here...> Fetch successful. <...more lines here...> ysam/csamtools.py", line 6, in __bootstrap__ ImportError: /home/tsakai/.python-eggs/pysam-0.1.1_kanwei_90e03180969d-py2.5-linux-x86_64-ucs2.egg-tmp/pysam/csamtools.so: undefined symbol: deflateSetHeader $ echo $? 1 So, I am lost now. Can somebody please give me a tip as to how to proceed? Many thanks. Regards, Tena Sakai tsakai@gallo.ucsf.edu