This looks very to similar to an issue discussed here: http://dev.list.galaxyproject.org/pbs-runner-deserializes-server-names-as-un.... The default branch of Galaxy contains changeset that should address this issue - https://bitbucket.org/galaxy/galaxy-central/commits/af5577a24c155fa04aa607ff.... Hope this helps. -John On Wed, Apr 2, 2014 at 11:35 AM, Ravi Alla <ravi.alla@berkeley.edu> wrote:
Hi guys, I keep getting an error everytime I start up the galaxy server. I am guessing this has to do with a job that galaxy is trying to resume and cannot find.
galaxy.jobs.runners ERROR 2014-04-02 09:31:10,889 Unhandled exception checking active jobs Traceback (most recent call last): File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/runners/__init__.py", line 366, in monitor self.check_watched_items() File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line 363, in check_watched_items ( failures, statuses ) = self.check_all_jobs() File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/runners/pbs.py", line 452, in check_all_jobs c = pbs.pbs_connect( pbs_server_name ) TypeError: in method 'pbs_connect', argument 1 of type 'char *'
Because of this error I cannot get any other jobs to run either. They just sit queued on the cluster. Any ideas? Thanks
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