Brad Chapman wrote:
Davide, Terry and Nate; This discussion is awesome. We've also been missing BAM display at UCSC and this thread finally cleared all the cobwebs so we could get it working.
Note that my galaxy configuration relies on a local mirror of the UCSC genome browser. Our galaxy runs as a multiserver (2 web servers on ports 8081 and 8082, one runner on 8100). I've installed mod_xsendfile as Nate suggested (http://tn123.ath.cx/mod_xsendfile/) and enabled it:
[... apache configuration ...]
I believe this is all... If your galaxy can communicate with main UCSC server you won't need some the patches above, but only the apache configuration.
I added the explicit information for getting this set up on nginx on the wiki:
http://bitbucket.org/galaxy/galaxy-central/wiki/Config/nginxProxy
Awesome, thanks!
All of the parts were there between the example configuration and Nate's talk, but this puts it together for those folks like me who hadn't made all the connections.
Nate, would you be able to provide some clues for the configuration to get uploads handled through nginx? Your talk mentions this is slightly more complex; I see the following variables that might be involved in universe_config:
nginx_x_archive_files_base upstream_gzip nginx_upload_store nginx_upload_path
and could use a bit of direction about which items in your sample config are critical for enabling it.
Yes, I'm planning on finally writing up the missing bits starting at the end of this week. --nate
Thanks, Brad _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev