Hello Rui, We have DESeq2 wrapper in our oqtans package and you will find this at https://github.com/ratschlab/oqtans_tools/tree/master/DESeq2 I am currently creating the associated tool_dependency.xml file for dumping the package in galaxy toolshed. otherwise it requires some manual effort to install via toolshed. May be it will help you, Vipin Hi All,
we are making a wrapper for deseq2, and there is a step where control/experimental conditions need to be determined. For example, it would be a column like the following in the input file
Type CTC CTC LM LM PT PT
and we want the select list to contain
CTC LM PT
In other words, we want to filter out the 'Type' and have only distinct ones in the select list. We could make it in two steps, generate a intermediate file for this but it would be nice that we could directly retrieve the distinct types to make the list. I took a look at the tool config wiki, but didn't see anything (maybe because it was a quick scan). Does anyone have any tip on this? we'll really appreciate.
Thanks, Rui
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