I'm not seeing anything other than the test environment report in the failing tests report for http://testtoolshed.g2.bx.psu.edu/view/fubar/htseq_bams_to_count_matrix - if you have time to take a look Dave? I'm having a hard time figuring out what I've done wrong - it builds, installs and tests fine on my test machine but I've probably forgotten some dependency that I already have installed on my laptop... The result for http://testtoolshed.g2.bx.psu.edu/view/fubar/edger_testmakes me think that one or more of the test input files is missing but it's hard to tell. I wonder if overall we need a more or less complete output data spew for failing tests to make the task of tracking them down easier? On Thu, Jun 27, 2013 at 8:58 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Wed, Jun 26, 2013 at 10:01 PM, Dave Bouvier <dave@bx.psu.edu> wrote:
Peter,
The empty failed tests folder issue has been resolved in
10171:eaa5112fefcd,
and the test tool shed has been updated to that revision.
--Dave B.
Great - currently all the missing test failures have been resolved :) The bad news is there seems to be a new sniffer bug.
http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go/f3a61c2cf309 Can see test failures (tool configuration problem).
http://testtoolshed.g2.bx.psu.edu/view/peterjc/effectivet3/392279f2e120 One test pass, on test failure. The failure is a bit odd and is likely a new sniffer related bug.
http://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss/26ce6e046040
Tests pass.
http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira_assembler/da604cc07658 Can see test failure, good.
http://testtoolshed.g2.bx.psu.edu/view/peterjc/nlstradamus/2be36fa7565e One pass, one failure - same new failure as effectiveT3 above.
http://testtoolshed.g2.bx.psu.edu/view/peterjc/seq_rename/44b2e489e26f Can see a failure, also seems to be sniffer related (but using a different datatype).
http://testtoolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp/4cd848c5590...
As before, no test results as there are marked as skip - yet this is still listed under "Latest revision: failing tool tests". The filter for this needs to exclude repositories marked as skip testing.
http://testtoolshed.g2.bx.psu.edu/view/peterjc/venn_list/51fe47a5a803 Can see test failure, good (missing undeclared dependency)
Thanks,
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