Hi Martin,

I have local instance.

I uploaded 1GB fastq compressed with .gz using Upload_local_file tool (installed from galaxy tool shed).

After the upload when I run fastqc it failed BUT when I upload the same file using Upload_file, fastqc works fine.

Cheers.

Amos Raphenya  Bioinformatics Software Developer Department of Biochemistry & Biomedical Sciences McMaster University, MDCL 2317 p: (905) 525-9140 ext: 22787 a: 1280 Main St W.,Hamilton, Ontario, Canada L8S 4K1 e:  raphenar@mcmaster.ca  skype: amos_raphenya

On Jan 28, 2016, at 3:08 PM, Martin Čech <marten@bx.psu.edu> wrote:

Hi Amos,

what Galaxy are you using and where are you seeing these messages?

thanks

Martin

On Thu, Jan 28, 2016 at 2:56 PM Raphenya, Amogelang <raphenar@mcmaster.ca> wrote:

Hi All,

Is there a faster way to upload or load large datasets into galaxy history without using FTP?

I tried Upload_local_file (to current history) and it doesn’t upload .gz files correctly as compared to when using Upload_file (from your computer).

Cheers.

Amos Raphenya  Bioinformatics Software Developer Department of Biochemistry & Biomedical Sciences McMaster University, MDCL 2317 p: (905) 525-9140 ext: 22787 a: 1280 Main St W.,Hamilton, Ontario, Canada L8S 4K1 e:  raphenar@mcmaster.ca  skype: amos_raphenya

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