Hi,

can you please check this setting?

https://github.com/galaxyproject/galaxy/blob/dev/config/galaxy.ini.sample#L270

Thanks,
Bjoern

Am 25.01.2016 um 15:46 schrieb Oksana Korol:
> Thanks, Bjoern!
>
> For my local install of Galaxy, logging in as a user worked and the icon
> is showing up (although I still had to manually go and change
> permissions on all the mako templates in ./database/compiled_templates
> directory). But our production instance of Galaxy (also v15.07 on CentOS
> 6.7) does not show the chart-symbol for Phyloviz, even when I'm logged
> in as a user. In production, it is not a clean install, but an upgrade
> from previous versions, so it is harder to figure out what's going on.
> There are no errors in the logs, so I'm still looking for any kind of
> clues of what could have gone wrong with the visualization.
>
> Cheers,
> Oksana
>
>     Message: 1
>     Date: Sat, 23 Jan 2016 19:55:47 +0100
>     From: Björn Grüning <bjoern.gruening@gmail.com
>     <mailto:bjoern.gruening@gmail.com>>
>     To: Oksana Korol <okorol@gmail.com <mailto:okorol@gmail.com>>,
>             galaxy-dev@lists.galaxyproject.org
>     <mailto:galaxy-dev@lists.galaxyproject.org>
>     Subject: Re: [galaxy-dev] Setting up visualization on Galaxy on CentOS
>     Message-ID: <56A3CCB3.9020503@gmail.com
>     <mailto:56A3CCB3.9020503@gmail.com>>

>     Content-Type: text/plain; charset=utf-8
>
>     Hi Oksana,
>
>     this work for me in 16.01 (upcoming). Please make sure you are logged
>     into your Galaxy as some user, not anonymous and than the Phyloviz
>     Visualisation will be available from the small chart-symbol next to the
>     (i) symbol.
>
>     Hope this helps,
>     Bjoern
>
>     Am 22.01.2016 um 23:53 schrieb Oksana Korol:
>     > Hi,
>     >
>     > I'm having trouble getting visualization icons, like Phyloviz, to show
>     > up on my Galaxy instance running in CentOS 6.7. Here are the steps I
>     > took, expecting it to work:
>     >
>     > 1. cloned Galaxy tag v15.07 (that's the version we need to run in
>     > production)
>     >
>     >  2. Followed the steps in
>     https://wiki.galaxyproject.org/VisualizationSetup
>     >   - Renamed datatypes_conf.xml.sample to
>     > datatypes_conf.xml
>     >   - Downloaded wigToBigWig, bedGraphToBigWig, and faToTwoBit
>     >   - Installed BED Tools
>     >   - Added above tools to my user path (galaxy_utils dir is where
>     > wigToBigWig and others are):
>     >
>     /usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/galaxyuser/bin:/home/galaxyuser/bin:/home/galaxyuser/galaxy_utils:/home/galaxyuser/bin:/*home/galaxyuser/galaxy_utils:/home/galaxyuser/galaxy_utils/BEDTools/bedtools2/bin
>     > *
>     > 3. Started Galaxy.
>     >
>     > 4. Uploaded a newick tree file (nhx), which is known to be displayable
>     > in phyloviz on a Ubuntu instance of Galaxy
>     >
>     > 5. Made sure the datatype is nhx
>     >
>     > 6. Expecting to see a Phyloviz "graph" icon on the left, when I expand
>     > the file in history, but there is nothing there.
>     >
>     > At this point I don't know where to dig to find how I can fix it. Any
>     > feedback, including your own stories for visualization setup or how I
>     > can debug what's not being picked up where, would be greatly
>     appreciated.
>     >
>     > Cheers,
>     > Oksana
>     > --