Dear all,<br><br>I installed a local galaxy using the latest codebase yesterday. During the startup, the loading of 3 tool wrappers are failed: epigraph.xml, epigraph_test.xml, access_libraries.xml.<br><br>Similar errors were reported in <a href="http://www.mail-archive.com/galaxy-dev@lists.bx.psu.edu/msg01839.html">http://www.mail-archive.com/galaxy-dev@lists.bx.psu.edu/msg01839.html</a><br>
<br>Have other people experienced the same problem? Any suggested solutions?<br><br>Thanks,<br>Leon<br><br>==== paster.log below ===<br>...<br>galaxy.tools DEBUG 2011-07-22 16:02:47,084 Loaded tool: hbvar 1.0.0<br>galaxy.tools DEBUG 2011-07-22 16:02:47,088 Loaded tool: fix_errors 1.0.0<br>
galaxy.tools DEBUG 2011-07-22 16:02:47,089 Loading section: Send Data<br>galaxy.tools ERROR 2011-07-22 16:02:47,089 error reading tool from path: data_destination/epigraph.xml<br>Traceback (most recent call last):<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 77, in load_tool<br>
    tool = self.load_tool( os.path.join( self.tool_root_dir, path ) )<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 169, in load_tool<br>    return ToolClass( config_file, root, self.app )<br>
  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 340, in __init__<br>    self.parse( root )<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 385, in parse<br>
    self.interpreter = command.get(&quot;interpreter&quot;, None)<br>AttributeError: &#39;NoneType&#39; object has no attribute &#39;get&#39;<br>galaxy.tools ERROR 2011-07-22 16:02:47,090 error reading tool from path: data_destination/epigraph_test.xml<br>
Traceback (most recent call last):<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 77, in load_tool<br>    tool = self.load_tool( os.path.join( self.tool_root_dir, path ) )<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 169, in load_tool<br>
    return ToolClass( config_file, root, self.app )<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 340, in __init__<br>    self.parse( root )<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 385, in parse<br>
    self.interpreter = command.get(&quot;interpreter&quot;, None)<br>AttributeError: &#39;NoneType&#39; object has no attribute &#39;get&#39;<br>...<br>galaxy.tools DEBUG 2011-07-22 16:02:50,556 Loading section: SNP/WGA: Data; Filters<br>
galaxy.tools DEBUG 2011-07-22 16:02:50,587 Loaded tool: upload1 1.1.3<br>galaxy.tools ERROR 2011-07-22 16:02:50,587 error reading tool from path: data_source/access_libraries.xml<br>Traceback (most recent call last):<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 77, in load_tool<br>
    tool = self.load_tool( os.path.join( self.tool_root_dir, path ) )<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 169, in load_tool<br>    return ToolClass( config_file, root, self.app )<br>
  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 340, in __init__<br>    self.parse( root )<br>  File &quot;/opt/galaxy/prog/galaxy-2011-7-21/lib/galaxy/tools/__init__.py&quot;, line 385, in parse<br>
    self.interpreter = command.get(&quot;interpreter&quot;, None)<br>AttributeError: &#39;NoneType&#39; object has no attribute &#39;get&#39;<br>...<br clear="all"><br><br>-- <br>Hailiang (Leon) Mei<br>Netherlands Bioinformatics Center (<a href="http://www.nbic.nl/">http://www.nbic.nl/</a>)    <br>
Skype: leon_mei    Mobile: +31 6 41709231<br>