73.16.113.171 - - [25/Jun/2019:10:38:04 -0900] "GET /api/tools/toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1/build?version=0.1&__identifer=x7nwf73vi1b&tool_version=0.1 HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:38:05 -0900] "GET /api/webhooks HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:38:08 -0900] "POST /api/tools/toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1/build HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" galaxy.tools DEBUG 2019-06-25 10:38:10,307 Validated and populated state for tool request (38.814 ms) galaxy.tools.actions INFO 2019-06-25 10:38:10,380 Handled output named output_confusion for tool toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1 (37.131 ms) galaxy.tools.actions INFO 2019-06-25 10:38:10,402 Handled output named output_prf for tool toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1 (21.811 ms) galaxy.tools.actions INFO 2019-06-25 10:38:10,420 Handled output named output_roc for tool toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1 (17.491 ms) galaxy.tools.actions INFO 2019-06-25 10:38:10,441 Added output datasets to history (21.286 ms) galaxy.tools.actions INFO 2019-06-25 10:38:10,443 Setup for job Job[unflushed,tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1] complete, ready to be enqueued (1.959 ms) galaxy.util.handlers DEBUG 2019-06-25 10:38:10,443 (Job[unflushed,tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1]) Selected handler 'main' by random choice from handler tag '_default_' galaxy.util.handlers INFO 2019-06-25 10:38:10,506 Flushed transaction for Job[id=1512,tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1] (62.218 ms) galaxy.util.handlers INFO 2019-06-25 10:38:10,506 (Job[id=1512,tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1]) Handler 'main' assigned using 'db-preassign' assignment method galaxy.tools.execute DEBUG 2019-06-25 10:38:10,506 Tool [toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1] created job [1512] (175.969 ms) galaxy.tools.execute DEBUG 2019-06-25 10:38:10,514 Executed 1 job(s) for tool toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1 request: (206.577 ms) 73.16.113.171 - - [25/Jun/2019:10:38:10 -0900] "POST /api/tools HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:38:10 -0900] "GET /api/webhooks HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" galaxy.jobs.mapper DEBUG 2019-06-25 10:38:10,812 (1512) Mapped job to destination id: local galaxy.jobs.handler DEBUG 2019-06-25 10:38:10,859 (1512) Dispatching to local runner galaxy.jobs DEBUG 2019-06-25 10:38:10,911 (1512) Persisting job destination (destination id: local) galaxy.jobs DEBUG 2019-06-25 10:38:10,914 (1512) Working directory for job is: /home/galaxy/galaxy/database/jobs_directory/001/1512 galaxy.jobs.runners DEBUG 2019-06-25 10:38:10,941 Job [1512] queued (81.315 ms) galaxy.jobs.handler INFO 2019-06-25 10:38:10,961 (1512) Job dispatched 73.16.113.171 - - [25/Jun/2019:10:38:10 -0900] "GET /api/histories/80cd097337880ba6/contents?details=347a23c1eeb904d6%2C507570fa0cf6094f%2Ce46d913b9d31b8bb%2Ca8e3e6b9bab391cb%2C6d859447875f8a96%2C4c9fabe2147a5cf5%2C0cc55343e470d0e1&order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2019-06-25T19%3A34%3A26.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" galaxy.tools.deps DEBUG 2019-06-25 10:38:11,158 Using dependency pandas version 0.22.0 of type conda galaxy.tools.deps DEBUG 2019-06-25 10:38:11,158 Using dependency scikit-learn version 0.19.1 of type conda galaxy.tools.deps.conda_util DEBUG 2019-06-25 10:38:11,159 Executing command: /home/galaxy/galaxy/database/dependencies/_conda/bin/conda list --name __pandas@0.22.0 --export > './database/tmp/jobdepsX2AH_ma5cc10bd2db8c3cc09fcfb66383a0dbdb32360bb1ee566b16b33514ebbfb623e/__pandas@0.22.0' galaxy.tools.deps.conda_util DEBUG 2019-06-25 10:38:11,570 Executing command: /home/galaxy/galaxy/database/dependencies/_conda/bin/conda create -y --quiet --override-channels --channel iuc --channel conda-forge --channel bioconda --channel defaults --unknown --use-index-cache --prefix /home/galaxy/galaxy/database/jobs_directory/001/1512/conda-env --file ./database/tmp/jobdepsX2AH_ma5cc10bd2db8c3cc09fcfb66383a0dbdb32360bb1ee566b16b33514ebbfb623e/__pandas@0.22.0 73.16.113.171 - - [25/Jun/2019:10:38:16 -0900] "GET /api/histories/80cd097337880ba6/contents?details=347a23c1eeb904d6%2C507570fa0cf6094f%2Ce46d913b9d31b8bb%2Ca8e3e6b9bab391cb%2C6d859447875f8a96%2C4c9fabe2147a5cf5%2C0cc55343e470d0e1&order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2019-06-25T19%3A38%3A10.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" Package plan for installation in environment /home/galaxy/galaxy/database/jobs_directory/001/1512/conda-env: The following NEW packages will be INSTALLED: blas: 1.0-mkl conda-forge ca-certificates: 2018.11.29-ha4d7672_0 conda-forge certifi: 2018.11.29-py36_1000 conda-forge intel-openmp: 2019.1-144 libffi: 3.2.1-hf484d3e_1005 conda-forge libgcc-ng: 7.3.0-hdf63c60_0 conda-forge libgfortran-ng: 7.2.0-hdf63c60_3 conda-forge libstdcxx-ng: 7.3.0-hdf63c60_0 conda-forge mkl: 2019.1-144 mkl_fft: 1.0.10-py36h14c3975_1 conda-forge mkl_random: 1.0.2-py36h637b7d7_2 conda-forge ncurses: 6.1-hf484d3e_1002 conda-forge numpy: 1.15.4-py36h7e9f1db_0 numpy-base: 1.15.4-py36hde5b4d6_0 openssl: 1.0.2p-h14c3975_1002 conda-forge pandas: 0.22.0-py36_1 conda-forge pip: 19.0.2-py36_0 conda-forge python: 3.6.7-hd21baee_1001 conda-forge python-dateutil: 2.8.0-py_0 conda-forge pytz: 2018.9-py_0 conda-forge readline: 7.0-hf8c457e_1001 conda-forge setuptools: 40.8.0-py36_0 conda-forge six: 1.12.0-py36_1000 conda-forge sqlite: 3.26.0-h67949de_1000 conda-forge tk: 8.6.9-h84994c4_1000 conda-forge wheel: 0.33.0-py36_0 conda-forge xz: 5.2.4-h14c3975_1001 conda-forge zlib: 1.2.11-h14c3975_1004 conda-forge CondaError: CondaHTTPError: HTTP 404 NOT FOUND for url Elapsed: 00:00.027142 CF-RAY: 4ec966a46e12a60d-IND An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way. CondaError: CondaHTTPError: HTTP 404 NOT FOUND for url Elapsed: 00:00.048632 CF-RAY: 4ec966a4cfeda607-IND An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way. CondaError: CondaHTTPError: HTTP 404 NOT FOUND for url Elapsed: 00:00.042120 CF-RAY: 4ec966a5180ea607-IND An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way. galaxy.tools.deps.conda_util DEBUG 2019-06-25 10:38:18,447 Executing command: /home/galaxy/galaxy/database/dependencies/_conda/bin/conda clean --tarballs -y Cache location: /home/galaxy/galaxy/database/dependencies/_conda/pkgs Will remove the following tarballs: /home/galaxy/galaxy/database/dependencies/_conda/pkgs ----------------------------------------------------- intel-openmp-2019.1-144.tar.bz2 885 KB ca-certificates-2018.11.29-ha4d7672_0.tar.bz2 143 KB --------------------------------------------------- Total: 1.0 MB Removed intel-openmp-2019.1-144.tar.bz2 Removed ca-certificates-2018.11.29-ha4d7672_0.tar.bz2 galaxy.jobs.runners ERROR 2019-06-25 10:38:18,875 (1512) Failure preparing job Traceback (most recent call last): File "/home/galaxy/galaxy/lib/galaxy/jobs/runners/__init__.py", line 223, in prepare_job modify_command_for_container=modify_command_for_container File "/home/galaxy/galaxy/lib/galaxy/jobs/runners/__init__.py", line 257, in build_command_line container=container File "/home/galaxy/galaxy/lib/galaxy/jobs/command_factory.py", line 69, in build_command __handle_dependency_resolution(commands_builder, job_wrapper, remote_command_params) File "/home/galaxy/galaxy/lib/galaxy/jobs/command_factory.py", line 162, in __handle_dependency_resolution if local_dependency_resolution and job_wrapper.dependency_shell_commands: File "/home/galaxy/galaxy/lib/galaxy/jobs/__init__.py", line 737, in dependency_shell_commands job_directory=self.working_directory File "/home/galaxy/galaxy/lib/galaxy/tools/__init__.py", line 1584, in build_dependency_shell_commands tool_instance=self File "/home/galaxy/galaxy/lib/galaxy/tools/deps/__init__.py", line 127, in dependency_shell_commands return [dependency.shell_commands() for dependency in ordered_dependencies if not isinstance(dependency, ContainerDependency)] File "/home/galaxy/galaxy/lib/galaxy/tools/deps/resolvers/conda.py", line 468, in shell_commands self.build_environment() File "/home/galaxy/galaxy/lib/galaxy/tools/deps/resolvers/conda.py", line 463, in build_environment raise DependencyException("Conda dependency seemingly installed but failed to build job environment.") DependencyException: Conda dependency seemingly installed but failed to build job environment. galaxy.tools.error_reports DEBUG 2019-06-25 10:38:19,413 Bug report plugin generated response None galaxy.tools.error_reports DEBUG 2019-06-25 10:38:19,413 Bug report plugin generated response None galaxy.tools.error_reports DEBUG 2019-06-25 10:38:19,413 Bug report plugin generated response None galaxy.model.metadata DEBUG 2019-06-25 10:38:19,417 Cleaning up external metadata files 73.16.113.171 - - [25/Jun/2019:10:38:21 -0900] "GET /api/histories/80cd097337880ba6/contents?details=347a23c1eeb904d6%2C507570fa0cf6094f%2Ce46d913b9d31b8bb%2Ca8e3e6b9bab391cb%2C6d859447875f8a96%2C4c9fabe2147a5cf5%2C0cc55343e470d0e1&order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2019-06-25T19%3A38%3A16.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:38:21 -0900] "GET /api/histories/80cd097337880ba6?keys=size%2Cnon_ready_jobs%2Ccontents_active%2Chid_counter HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:38:25 -0900] "GET /api/histories/80cd097337880ba6/contents/datasets/a21e7961042e63e2 HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=x7nwf73vi1b" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:38:27 -0900] "GET /api/datasets/a21e7961042e63e2 HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/datasets/error?dataset_id=a21e7961042e63e2&__identifer=k3y1wqdi6mf" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:38:27 -0900] "GET /api/jobs/38ef4c04be0d2623?full=True HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/datasets/error?dataset_id=a21e7961042e63e2&__identifer=k3y1wqdi6mf" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:39:28 -0900] "GET /api/tools/toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_nn_classifier/sklearn_nn_classifier/1.0/build?version=1.0&__identifer=7g948yueclv&tool_version=1.0 HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fsklearn_nn_classifier%2Fsklearn_nn_classifier%2F1.0&version=1.0&__identifer=7g948yueclv" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:39:29 -0900] "GET /api/webhooks HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fsklearn_nn_classifier%2Fsklearn_nn_classifier%2F1.0&version=1.0&__identifer=7g948yueclv" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:39:29 -0900] "GET /api/tools/toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_nn_classifier/sklearn_nn_classifier/1.0/citations HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fsklearn_nn_classifier%2Fsklearn_nn_classifier%2F1.0&version=1.0&__identifer=7g948yueclv" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:39:44 -0900] "GET /api/tools/toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1/build?version=0.1&__identifer=c9ee3f84pku&tool_version=0.1 HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=c9ee3f84pku" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:39:44 -0900] "GET /api/webhooks HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=c9ee3f84pku" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15" 73.16.113.171 - - [25/Jun/2019:10:39:48 -0900] "POST /api/tools/toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1/build HTTP/1.0" 200 - "http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1&version=0.1&__identifer=c9ee3f84pku" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.1.1 Safari/605.1.15"