Hi John,

 

Sorry for the late reply. Thanks for making the new ticket.

 

Regarding your question: yes, the problem seems permanent and is only solved by editing the metadata of the history item (or at least opening the metadata and clicking “save”). I found no other trick to work around it.

 

Best regards,

 

Pieter.

 

From: John Chilton [mailto:jmchilton@gmail.com]
Sent: woensdag 19 november 2014 15:53
To: Lukasse, Pieter
Cc: Bossers, Alex; Kuijt, Eric; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Strange issue with datatypes in Galaxy version of last week

 

I have created a ticket for this issue here (https://trello.com/c/jxqT0ndZ).

 

When the file is in the incorrect state (extension missing from the download) - if you close out your browser tab and reopen it in a new window and try to download the file does it still exhibit the problem (indicating a client-side problem instead of a server metadata/datatype issue)?

 

-John

 

On Wed, Nov 19, 2014 at 7:49 AM, Lukasse, Pieter <pieter.lukasse@wur.nl> wrote:

Hi,

 

This issue is appearing again, after the upgrade of our Galaxy on October the 23rd....anyone experiencing the same?

 

Thanks,

 

Pieter.

 

From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Lukasse, Pieter
Sent: vrijdag 4 april 2014 10:59
To: Bossers, Alex; Kuijt, Eric
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Strange issue with datatypes in Galaxy version of last week

 

Hi Alex, all

 

FYI – I’ve added the card to https://trello.com/c/ro8knsaa  some time ago. Can you please vote for it?

 

Thanks,

 

Pieter.

 

From: Bossers, Alex
Sent: dinsdag 25 maart 2014 16:52
To: Lukasse, Pieter
Cc: galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev] Strange issue with datatypes in Galaxy version of last week

 

Pieter,

I just experienced the same with another generic tabular .tab file output. It broke the filename at dash without any extension.

The file itself was ok, just the name.

Alex

 

 

Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Lukasse, Pieter
Verzonden: dinsdag 25 maart 2014 16:33
Aan: galaxy-dev@lists.bx.psu.edu
Onderwerp: [galaxy-dev] Strange issue with datatypes in Galaxy version of last week

 

Hi,

 

Apparently a new datatypes bug has been introduced in the Galaxy version of last week:

 

I have a tool that generates a csv file. Tool configuration is like this:

<outputs>

  <data name="simOut" format="msclust.csv" label="${tool.name} on ${on_string} - SIM file"/>

 

The datatypes has this entry:

<datatype extension="msclust.csv" type="galaxy.datatypes.tabular:Tabular" mimetype="text/csv" display_in_upload="true" subclass="true"/>

 

At first Galaxy output seems fine:

 

But when I download the file, the downloaded file name will be : Galaxy40-[MsClust_on_data_1_-_SIM_file]-

 

When I go to “edit attributes” and just click “save”, then upon downloading again, the file name is correct... Galaxy40-[MsClust_on_data_1_-_SIM_file].msclust.csv  .

 

Anyone faced this issue?

 

Thanks and regards,

 

Pieter.

 

Pieter Lukasse

Wageningen UR, Plant Research International

Departments of Bioscience and Bioinformatics

Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands

+31-317481122; skype: pieter.lukasse.wur

http://www.pri.wur.nl

 


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