details: http://www.bx.psu.edu/hg/galaxy/rev/9bbf66f38265 changeset: 2665:9bbf66f38265 user: Dan Blankenberg <dan@bx.psu.edu> date: Wed Sep 09 10:08:29 2009 -0400 description: Fix implicit maf to fasta converter 1 file(s) affected in this change: lib/galaxy/datatypes/converters/maf_to_fasta_converter.py diffs (16 lines): diff -r 4dfa7fd53a0c -r 9bbf66f38265 lib/galaxy/datatypes/converters/maf_to_fasta_converter.py --- a/lib/galaxy/datatypes/converters/maf_to_fasta_converter.py Fri Sep 04 11:08:10 2009 -0400 +++ b/lib/galaxy/datatypes/converters/maf_to_fasta_converter.py Wed Sep 09 10:08:29 2009 -0400 @@ -30,12 +30,3 @@ if __name__ == "__main__": __main__() - - for component in block.components: - spec, chrom = maf_utilities.src_split( component.src ) - if spec not in spec_counts: - spec_counts[ spec ] = 0 - else: - spec_counts[ spec ] += 1 - file_out.write( "%s\n" % maf_utilities.get_fasta_header( component, { 'block_index' : block_num, 'species' : spec, 'sequence_index' : spec_counts[ spec ] }, suffix = "%s_%i_%i" % ( spec, block_num, spec_counts[ spec ] ) ) ) - file_out.write( "%s\n" % component.text )