This is MIRA V3.4.0 (production version).
Please cite: Chevreux, B., Wetter, T. and Suhai, S. (1999), Genome Sequence
Assembly Using Trace Signals and Additional Sequence Information.
Computer Science and Biology: Proceedings of the German Conference on
Bioinformatics (GCB) 99, pp. 45-56.
To (un-)subscribe the MIRA mailing lists, see:
http://www.chevreux.org/mira_mailinglists.html
After subscribing, mail general questions to the MIRA talk mailing list:
mira_talk@freelists.org
To report bugs or ask for features, please use the new ticketing system at:
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This ensures that requests don't get lost.
Compiled by: bach
Sun Aug 21 17:50:30 CEST 2011
On: Linux arcadia 2.6.38-11-generic #48-Ubuntu SMP Fri Jul 29 19:02:55 UTC 2011 x86_64 x86_64 x86_64 GNU/Linux
Compiled in boundtracking mode.
Compiled in bugtracking mode.
Compiled with ENABLE64 activated.
Runtime settings (sorry, for debug):
Size of size_t : 8
Size of uint32 : 4
Size of uint32_t: 4
Size of uint64 : 8
Size of uint64_t: 8
Current system: Linux whsiao-ubuntu 2.6.32-40-generic #87-Ubuntu SMP Tue Mar 6 00:56:56 UTC 2012 x86_64 GNU/Linux
Parsing parameters: --job=denovo,genome,accurate SANGER_SETTINGS -LR:lsd=1:mxti=0:ft=fastq -FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat COMMON_SETTINGS -OUT:orf=1:orc=1:ora=1:orw=1:orm=0:org=0:ors=0 -OUT:rrot=1:rtd=1
Parameters parsed without error, perfect.
-CL:pec and -CO:emeas1clpec are set, setting -CO:emea values to 1.
------------------------------------------------------------------------------
Parameter settings seen for:
Sanger data (also common parameters)
Used parameter settings:
General (-GE):
Project name in (proin) : mira
Project name out (proout) : mira
Number of threads (not) : 2
Automatic memory management (amm) : yes
Keep percent memory free (kpmf) : 15
Max. process size (mps) : 0
EST SNP pipeline step (esps) : 0
Use template information (uti) : yes
Template insert size minimum (tismin) : -1
Template insert size maximum (tismax) : -1
Template partner build direction (tpbd) : -1
Colour reads by hash frequency (crhf) : yes
Load reads options (-LR):
Load sequence data (lsd) : yes
File type (ft) : fastq
External quality (eq) : from SCF (scf)
Ext. qual. override (eqo) : no
Discard reads on e.q. error (droeqe): no
Solexa scores in qual file (ssiqf) : no
FASTQ qual offset (fqqo) : 0
Wants quality file (wqf) : yes
Read naming scheme (rns) : [san] Sanger Institute (sanger)
Merge with XML trace info (mxti) : no
Filecheck only (fo) : no
Assembly options (-AS):
Number of passes (nop) : 4
Skim each pass (sep) : yes
Maximum number of RMB break loops (rbl) : 2
Maximum contigs per pass (mcpp) : 0
Minimum read length (mrl) : 80
Minimum reads per contig (mrpc) : 2
Base default quality (bdq) : 10
Enforce presence of qualities (epoq) : yes
Automatic repeat detection (ard) : yes
Coverage threshold (ardct) : 2
Minimum length (ardml) : 400
Grace length (ardgl) : 40
Use uniform read distribution (urd) : no
Start in pass (urdsip) : 3
Cutoff multiplier (urdcm) : 1.5
Keep long repeats separated (klrs) : no
Spoiler detection (sd) : yes
Last pass only (sdlpo) : yes
Use genomic pathfinder (ugpf) : yes
Use emergency search stop (uess) : yes
ESS partner depth (esspd) : 500
Use emergency blacklist (uebl) : yes
Use max. contig build time (umcbt) : no
Build time in seconds (bts) : 10000
Strain and backbone options (-SB):
Load straindata (lsd) : no
Assign default strain (ads) : no
Default strain name (dsn) : StrainX
Load backbone (lb) : no
Start backbone usage in pass (sbuip) : 3
Backbone file type (bft) : fasta
Backbone base quality (bbq) : 30
Backbone strain name (bsn) : ReferenceStrain
Force for all (bsnffa) : no
Backbone rail from strain (brfs) :
Backbone rail length (brl) : 0
Backbone rail overlap (bro) : 0
Also build new contigs (abnc) : yes
Dataprocessing options (-DP):
Use read extensions (ure) : yes
Read extension window length (rewl) : 30
Read extension w. maxerrors (rewme) : 2
First extension in pass (feip) : 0
Last extension in pass (leip) : 0
Clipping options (-CL):
Merge with SSAHA2/SMALT vector screen (msvs): no
Gap size (msvsgs) : 10
Max front gap (msvsmfg) : 60
Max end gap (msvsmeg) : 120
Strict front clip (msvssfc) : 0
Strict end clip (msvssec) : 0
Possible vector leftover clip (pvlc) : yes
maximum len allowed (pvcmla) : 18
Min qual. threshold for entire read (mqtfer): 0
Number of bases (mqtfernob) : 0
Quality clip (qc) : no
Minimum quality (qcmq) : 20
Window length (qcwl) : 30
Bad stretch quality clip (bsqc) : yes
Minimum quality (bsqcmq) : 20
Window length (bsqcwl) : 30
Masked bases clip (mbc) : yes
Gap size (mbcgs) : 20
Max front gap (mbcmfg) : 40
Max end gap (mbcmeg) : 60
Lower case clip (lcc) : no
Clip poly A/T at ends (cpat) : no
Keep poly-a signal (cpkps) : no
Minimum signal length (cpmsl) : 12
Max errors allowed (cpmea) : 1
Max gap from ends (cpmgfe) : 9
Clip 3 prime polybase (c3pp) : no
Minimum signal length (c3ppmsl) : 12
Max errors allowed (c3ppmea) : 2
Max gap from ends (c3ppmgfe) : 9
Clip known adaptors right (ckar) : no
Ensure minimum left clip (emlc) : yes
Minimum left clip req. (mlcr) : 25
Set minimum left clip to (smlc) : 30
Ensure minimum right clip (emrc) : no
Minimum right clip req. (mrcr) : 10
Set minimum right clip to (smrc) : 20
Apply SKIM chimera detection clip (ascdc) : yes
Apply SKIM junk detection clip (asjdc) : no
Propose end clips (pec) : yes
Bases per hash (pecbph) : 17
Handle Solexa GGCxG problem (pechsgp) : yes
Clip bad solexa ends (cbse) : yes
Parameters for SKIM algorithm (-SK):
Number of threads (not) : 2
Also compute reverse complements (acrc) : yes
Bases per hash (bph) : 21
Hash save stepping (hss) : 1
Percent required (pr) : 65
Max hits per read (mhpr) : 2000
Max megahub ratio (mmhr) : 0
SW check on backbones (swcob) : no
Freq. est. min normal (fenn) : 0.4
Freq. est. max normal (fexn) : 1.6
Freq. est. repeat (fer) : 1.9
Freq. est. heavy repeat (fehr) : 8
Freq. est. crazy (fecr) : 20
Mask nasty repeats (mnr) : yes
Nasty repeat ratio (nrr) : 100
Repeat level in info file (rliif) : 6
Max hashes in memory (mhim) : 15000000
MemCap: hit reduction (mchr) : 2048
Pathfinder options (-PF):
Use quick rule (uqr) : yes
Quick rule min len 1 (qrml1) : 200
Quick rule min sim 1 (qrms1) : 90
Quick rule min len 2 (qrml2) : 100
Quick rule min sim 2 (qrms2) : 95
Backbone quick overlap min len (bqoml) : 150
Max. start cache fill time (mscft) : 5
Align parameters for Smith-Waterman align (-AL):
Bandwidth in percent (bip) : 20
Bandwidth max (bmax) : 130
Bandwidth min (bmin) : 25
Minimum score (ms) : 30
Minimum overlap (mo) : 17
Minimum relative score in % (mrs) : 65
Solexa_hack_max_errors (shme) : 0
Extra gap penalty (egp) : no
extra gap penalty level (egpl) : [san] low
Max. egp in percent (megpp) : 100
Contig parameters (-CO):
Name prefix (np) : mira
Reject on drop in relative alignment score in % (rodirs) : 25
Mark repeats (mr) : yes
Only in result (mroir) : no
Assume SNP instead of repeats (asir) : no
Minimum reads per group needed for tagging (mrpg) : 2
Minimum neighbour quality needed for tagging (mnq) : 20
Minimum Group Quality needed for RMB Tagging (mgqrt) : 30
End-read Marking Exclusion Area in bases (emea) : 1
Set to 1 on clipping PEC (emeas1clpec) : yes
Also mark gap bases (amgb) : yes
Also mark gap bases - even multicolumn (amgbemc) : yes
Also mark gap bases - need both strands (amgbnbs): yes
Force non-IUPAC consensus per sequencing type (fnicpst) : no
Merge short reads (msr) : no
Keep ends unmerged (msrkeu) : -1
Gap override ratio (gor) : 66
Edit options (-ED):
Automatic contig editing (ace) : no
Sanger only:
Strict editing mode (sem) : no
Confirmation threshold in percent (ct) : 50
Misc (-MI):
Stop on NFS (sonfs) : yes
Extended log (el) : no
Large contig size (lcs) : 500
Large contig size for stats(lcs4s) : 5000
Stop on max read name length (somrnl) : 40
Directories (-DI):
Working directory :
When loading EXP files :
When loading SCF files :
Top directory for writing files : mira_assembly
For writing result files : mira_assembly/mira_d_results
For writing result info files : mira_assembly/mira_d_info
For writing tmp files : mira_assembly/mira_d_tmp
Tmp redirected to (trt) :
For writing checkpoint files : mira_assembly/mira_d_chkpt
File names (-FN):
When loading sequences from FASTA : mira_in.sanger.fasta
When loading qualities from FASTA quality : mira_in.sanger.fasta.qual
When loading sequences from FASTQ : /media/partition2_/galaxydb_data/000/dataset_290.dat
When loading project from CAF : mira_in.sanger.caf
When loading project from MAF (disabled) : mira_in.sanger.maf
When loading EXP fofn : mira_in.sanger.fofn
When loading project from PHD : mira_in.phd.1
When loading strain data : mira_straindata_in.txt
When loading XML trace info files : mira_traceinfo_in.sanger.xml
When loading SSAHA2 vector screen results : mira_ssaha2vectorscreen_in.txt
When loading SMALT vector screen results : mira_smaltvectorscreen_in.txt
When loading backbone from MAF : mira_backbone_in.maf
When loading backbone from CAF : mira_backbone_in.caf
When loading backbone from GenBank : mira_backbone_in.gbf
When loading backbone from GFF3 : mira_backbone_in.gff3
When loading backbone from FASTA : mira_backbone_in.fasta
Output files (-OUTPUT/-OUT):
Save simple singlets in project (sssip) : no
Save tagged singlets in project (stsip) : yes
Remove rollover tmps (rrot) : yes
Remove tmp directory (rtd) : yes
Result files:
Saved as CAF (orc) : yes
Saved as MAF (orm) : no
Saved as FASTA (orf) : yes
Saved as GAP4 (directed assembly) (org) : no
Saved as phrap ACE (ora) : yes
Saved as GFF3 (org3) : no
Saved as HTML (orh) : no
Saved as Transposed Contig Summary (ors) : no
Saved as simple text format (ort) : no
Saved as wiggle (orw) : yes
Temporary result files:
Saved as CAF (otc) : yes
Saved as MAF (otm) : no
Saved as FASTA (otf) : no
Saved as GAP4 (directed assembly) (otg) : no
Saved as phrap ACE (ota) : no
Saved as HTML (oth) : no
Saved as Transposed Contig Summary (ots) : no
Saved as simple text format (ott) : no
Extended temporary result files:
Saved as CAF (oetc) : no
Saved as FASTA (oetf) : no
Saved as GAP4 (directed assembly) (oetg) : no
Saved as phrap ACE (oeta) : no
Saved as HTML (oeth) : no
Save also singlets (oetas) : no
Alignment output customisation:
TEXT characters per line (tcpl) : 60
HTML characters per line (hcpl) : 60
TEXT end gap fill character (tegfc) :
HTML end gap fill character (hegfc) :
File / directory output names:
CAF : mira_out.caf
MAF : mira_out.maf
FASTA : mira_out.unpadded.fasta
FASTA quality : mira_out.unpadded.fasta.qual
FASTA (padded) : mira_out.padded.fasta
FASTA qual.(pad): mira_out.padded.fasta.qual
GAP4 (directory): mira_out.gap4da
ACE : mira_out.ace
HTML : mira_out.html
Simple text : mira_out.txt
TCS overview : mira_out.tcs
Wiggle : mira_out.wig
------------------------------------------------------------------------------
Deleting old directory mira_assembly ... done.
Creating directory mira_assembly ... done.
Creating directory mira_assembly/mira_d_tmp ... done.
Creating directory mira_assembly/mira_d_results ... done.
Creating directory mira_assembly/mira_d_info ... done.
Creating directory mira_assembly/mira_d_chkpt ... done.
Tmp directory is not on a NFS mount, good.
Localtime: Thu Apr 19 10:53:58 2012
Loading data (Sanger) from FASTQ files,
Localtime: Thu Apr 19 10:53:58 2012
Counting sequences in FASTQ file: found 1 sequences.
Localtime: Thu Apr 19 10:53:58 2012
Localtime: Thu Apr 19 10:53:58 2012
Checking SCF files (loading qualities only if needed):
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%]
Done.
0 SCF files loaded ok.
Sanger will load 1 reads.
Longest Sanger: 36
Longest 454: 0
Longest IonTor: 0
Longest PacBio: 0
Longest Solexa: 0
Longest Solid: 0
Longest overall: 36
Total reads to load: 1
Reserving space for reads
Reserved space for 11 reads.
Loading data (Sanger) from FASTQ files,
Localtime: Thu Apr 19 10:53:58 2012
Counting sequences in FASTQ file: found 1 sequences.
Localtime: Thu Apr 19 10:53:58 2012
Using calculated FASTQ quality offset: 104
Localtime: Thu Apr 19 10:53:58 2012
Loading data from FASTQ file:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%]
Done.
Loaded 1 reads, Localtime: Thu Apr 19 10:53:58 2012
Localtime: Thu Apr 19 10:53:58 2012
Checking SCF files (loading qualities only if needed):
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%]
Done.
0 SCF files loaded ok.
1 SCF files were not found (see 'mira_assembly/mira_d_tmp/mira_info_scfreadfail.0' for a list of names).
Loaded 1 Sanger reads.
Total reads loaded: 1
Localtime: Thu Apr 19 10:53:58 2012
Checking SCF files (loading qualities only if needed):
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%]
Done.
0 SCF files loaded ok.
1 SCF files were not found (see 'mira_assembly/mira_d_tmp/mira_info_scfreadfail.0' for a list of names).
Checking reads for trace data:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|.... [100%]
No SCF data present in any read, automatic contig editing for Sanger data is now switched off.
1 reads with valid data for assembly.
Localtime: Thu Apr 19 10:53:58 2012
Generated 1 unique template ids for 1 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Apr 19 10:53:58 2012
Generated 0 unique strain ids for 1 reads.
Strain "default" has 1 reads.
Have read pool with 1 reads.
===========================================================================
Pool statistics:
Backbones: 0 Backbone rails: 0
Sanger 454 IonTor PacBio Solexa SOLiD
----------------------------------------
Total reads 1 0 0 0 0 0
Reads wo qual 0 0 0 0 0 0
Used reads 0 0 0 0 0 0
Avg tot rlen 36 0 0 0 0 0
Avg rlen used 0 0 0 0 0 0
With strain 0 0 0 0 0 0
W/o clips 0 0 0 0 0 0
Sanger total bases:36 used bases in used reads: 0
454 total bases:0 used bases in used reads: 0
IonTor total bases:0 used bases in used reads: 0
PacBio total bases:0 used bases in used reads: 0
Solexa total bases:0 used bases in used reads: 0
Solid total bases:0 used bases in used reads: 0
===========================================================================
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 16209628 kB
MemFree: 6527928 kB
Buffers: 324332 kB
Cached: 6344208 kB
SwapCached: 424 kB
Active: 5900208 kB
Inactive: 2224260 kB
Active(anon): 1308772 kB
Inactive(anon): 179636 kB
Active(file): 4591436 kB
Inactive(file): 2044624 kB
Unevictable: 56 kB
Mlocked: 56 kB
SwapTotal: 39535608 kB
SwapFree: 39531904 kB
Dirty: 4292 kB
Writeback: 0 kB
AnonPages: 1455560 kB
Mapped: 187664 kB
Shmem: 32480 kB
Slab: 326072 kB
SReclaimable: 296460 kB
SUnreclaim: 29612 kB
KernelStack: 4000 kB
PageTables: 31452 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 47640420 kB
Committed_AS: 3610840 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 354268 kB
VmallocChunk: 34359380860 kB
HardwareCorrupted: 0 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 2587200 kB
DirectMap2M: 13926400 kB
DirectMap1G: 0 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
Tgid: 20591
Pid: 20591
PPid: 20590
TracerPid: 0
Uid: 0 0 0 0
Gid: 0 0 0 0
FDSize: 64
Groups: 0
VmPeak: 11920 kB
VmSize: 11916 kB
VmLck: 0 kB
VmHWM: 7192 kB
VmRSS: 7192 kB
VmData: 6556 kB
VmStk: 88 kB
VmExe: 5236 kB
VmLib: 0 kB
VmPTE: 40 kB
Threads: 1
SigQ: 1/16382
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000001001000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: ffffffffffffffff
CapEff: ffffffffffffffff
CapBnd: ffffffffffffffff
Cpus_allowed: 3f
Cpus_allowed_list: 0-5
Mems_allowed: 00000000,00000001
Mems_allowed_list: 0
voluntary_ctxt_switches: 10
nonvoluntary_ctxt_switches: 4
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 1 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 3136 (3 KiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 1 24 B 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 0 24 B 0 B 0 B
AS_clipright: 0 24 B 0 B 0 B
AS_used_ids: 0 24 B 0 B 0 B
AS_multicopies: 0 24 B 0 B 0 B
AS_hasmcoverlaps: 0 24 B 0 B 0 B
AS_maxcoveragereached: 0 24 B 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 0 24 B 0 B 0 B
AS_isdebris: 0 24 B 0 B 0 B
AS_needalloverlaps: 0 40 B 0 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedtmpfiles: 3 112 B 0 B 0 B
Total: 4008 (4 KiB)
================================================================================
Dynamic allocs: 0
Align allocs: 0
Fatal error (may be due to problems of the input data or parameters):
"No read can be used for assembly."
->Thrown: void Assembly::dumpSomeStatistics()
->Caught: main
Aborting process, probably due to error in the input data or parametrisation.
Please check the output log for more information.
For help, please write a mail to the mira talk mailing list.
Subscribing / unsubscribing to mira talk, see: http://www.freelists.org/list/mira_talk
CWD: /usr/local/projects/galaxy-dist/database/job_working_directory/000/253
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
MIRA took 0.00 minutes
Return error code 1 from command:
mira --job=denovo,genome,accurate SANGER_SETTINGS -LR:lsd=1:mxti=0:ft=fastq -FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat COMMON_SETTINGS -OUT:orf=1:orc=1:ora=1:orw=1:orm=0:org=0:ors=0 -OUT:rrot=1:rtd=1
Thanks,
Tyler
On Thu, Apr 19, 2012 at 10:48 AM, Peter Cock
<p.j.a.cock@googlemail.com> wrote:
On Thu, Apr 19, 2012 at 6:35 PM, JIE CHEN <
jiechenable1987@gmail.com> wrote:
> Hi Peter,
>
> Thank you for your patience. I checked the error message in the history.
> They all give exactly the same error-- the one i gave in the first thread.
Return error code 1 from command:
mira --job=denovo,genome,accurate SANGER_SETTINGS
-LR:lsd=1:mxti=0:ft=fastq
-FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat
SOLEXA_SETTINGS -LR:lsd=1:ft=fastq
-FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat
COMMON_SETTINGS -OUT:orf=1:orc=1:ora=1:orw=1:orm=0:org=0:ors=0
-OUT:rrot=1:rtd=1
I'm pretty sure you are just telling me the error message. I would have expected
more than that, e.g. a line "MIRA took XXX minutes" before that error message.
To try to be even clearer:
1. Start your web browser and goto your Galaxy
2. Upload/import the files
3. Select the MIRA tool from left hand pane
4. Select input files and set parameters
5. Click "Execute"
6. Notice that six new history entries appear: MIRA contigs (FASTA),
MIRA contigs (QUAL)",MIRA contigs (CAF), MIRA contigs (ACE)", MIRA
coverage (Wiggle), MIRA log
7. Wait for MIRA to fail and the six new history entries to go red.
8. Click on the "eye" icon for the red history item "MIRA log"
9. Copy and paste the MIRA log contents to an email.
Also, and perhaps equally useful, can you access this server at the
command line and try the exact same failing command (from a temp
directory - it may create lots of files and folders)?
Peter