Hi Ulf, What I do: 1. make a history, doing the steps you want to do on one input file 2. create a workflow of that history 3. assemble all input files in one history 4. run the workflow and select the multiple input files to run the workflow on. 5. Optionally: send the results to a new history, for every input file you will get a new history, properly named. Hope this helps, Joachim Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 10/01/2013 02:27 PM, Ulf Schaefer wrote:
Dear all
We frequently find ourselves in situations where a tool needs to be run with a lot of input files. For example, run the GATK UnifiedGenotyper with easily dozens of bam files.
Using the <repeat> in this case requires quite a bit of clicking. Is there a more conventient way fo doing this? Maybe similar to the multi-file-select that is possible for workflow inputs?
I saw some older discussions on this or similar issues, but I am a bit lost what the current official stable proposed solution for this is.
Thanks for your help Ulf
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