On Wed, Jan 4, 2012 at 12:04 PM, Langhorst, Brad <Langhorst@neb.com> wrote:
Usha:
Galaxy is essentially a wrapper around other command line tools.
So, while you could probably extract some of its pieces to run on the command line, I don't know why you would want to.
I would argue it would be beneficial to invoke pipelines from the command line instead of being forced to use the web-based interface. command line is beneficial for large #'s of datasets that need to be analyzed.