After upgrading to the latest distribution release (4.1.2013) I can no longer start the reports web application. The reports-webapp.log shows the following exception. I've created a bug report on Trello for reference: https://trello.com/c/o0S3klAF
Traceback (most recent call last):
File "./scripts/paster.py", line 33, in <module>
serve.run()
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/util/pastescript/serve.py", line 1056, in run
invoke(command, command_name, options, args[1:]) File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/util/pastescript/serve.py", line 1062, in invoke
exit_code = runner.run(args)
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/util/pastescript/serve.py", line 227, in run
result = self.command()
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/util/pastescript/serve.py", line 650, in command
app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars)
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/util/pastescript/loadwsgi.py", line 350, in loadapp
return loadobj(APP, uri, name=name, **kw)
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/util/pastescript/loadwsgi.py", line 375, in loadobj
return context.create()
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/util/pastescript/loadwsgi.py", line 813, in create
return self.object_type.invoke(self)
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/util/pastescript/loadwsgi.py", line 249, in invoke
return fix_call(context.object, context.global_conf, **context.local_conf)
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/util/pastescript/loadwsgi.py", line 97, in fix_call
val = callable(*args, **kw)
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/webapps/reports/buildapp.py", line 61, in app_factory
add_ui_controllers( webapp, app )
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/webapps/reports/buildapp.py", line 33, in add_ui_controllers
from galaxy.web.base.controller import BaseUIController
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/web/base/controller.py", line 23, in <module>
from galaxy.visualization.genome.visual_analytics import get_tool_def
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/visualization/genome/visual_analytics.py", line 3, in <module>
from galaxy.tools.parameters.basic import IntegerToolParameter, FloatToolParameter, SelectToolParameter
File "/Users/lparsons/Documents/projects/sequencing/galaxy/galaxy-test1/lib/galaxy/tools/__init__.py", line 57, in <module>
from galaxy.visualization.genome.visual_analytics import TracksterConfig
ImportError: cannot import name TracksterConfig
Removing PID file reports_webapp.pid
--
Lance Parsons - Scientific Programmer
134 Carl C. Icahn Laboratory
Lewis-Sigler Institute for Integrative Genomics
Princeton University
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