I tested all versions of setuptools available in PyPI from 0.6c11 up to 7.0. I found that galaxy fails to fetch eggs with the following error when setuptools > 6.0.2 (i.e., 6.1 and 7.0). ##### * Creating directory in /mnt for galaxy data * Starting Galaxy Galaxy Some eggs are out of date, attempting to fetch... Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 46, in <module> c.resolve() # Only fetch eggs required by the config File "/opt/galaxy/web/lib/galaxy/eggs/__init__.py", line 347, in resolve egg.resolve() File "/opt/galaxy/web/lib/galaxy/eggs/__init__.py", line 192, in resolve if e.args[1].key != e.args[0].key: IndexError: tuple index out of range Fetch failed. ##### Cheers, -Evan Bollig Research Associate | Application Developer | User Support Consultant Minnesota Supercomputing Institute 599 Walter Library 612 624 1447 evan@msi.umn.edu boll0107@umn.edu