On Sep 4, 2013, at 9:17 AM, Nikos Sidiropoulos wrote:

> Hi Bjørn
>
> > that does not look like a bismark error. Is it happen with other tools
> > as well?
>
> No, I have only experienced it with Bismark.
>
> > Not sure, sorry. But you should migrate to the new job configuration,
> > better sooner than later.
>
> I am starting to get that idea. There are jobs still running on the server. When they're done I'll migrate it and get back to you if the problem is fixed or not.

Hi Nikos,

The old-style configuration is still supported for now.  I suspect this may be a problem of the tool not loading in the handler application.  Are you running a multiprocess Galaxy setup?  If so, you will need to restart all Galaxy processes after installing tools from the tool shed.

--nate

>
> Bests,
> Nikos
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