Re: [galaxy-dev] Include some XML in <configfiles> tag

7 Mar 2013

      Hi Ross,

Yep it works like a charm, this is exactly what I was looking for !

Thanks a lot.

--
David

------ Original Message ------
From: "Ross" <ross.lazarus@gmail.com>
To: "David Angot" <davida@intersect.org.au>
Cc: "galaxy-dev@bx.psu.edu" <galaxy-dev@bx.psu.edu>
Sent: 8/03/2013 4:47:27 PM
Subject: Re: [galaxy-dev] Include some XML in <configfiles> tag
...
Hi, David.
does enclosing your XML in a CDATA section help? It should just get 
written out without being interpreted, and it works for me in the 
toolfactory - the contents still get written out but without the CDATA 
section.
<configfiles>
    <configfile name="loadTestxml">
<![CDATA[
<!DOCTYPE crystal SYSTEM "/usr/share/sgml/crystal.dtd">
<!--- Load a pos file called "babla.pos" -->
<crystal>
<version value="0.0.1"/>
<posload name="${posfile}"/>
</crystal>
]]>
     </configfile>
 </configfiles>
On Fri, Mar 8, 2013 at 4:23 PM, David Angot <davida@intersect.org.au> 
wrote:
...
Hello,
I have a tool that takes an XML file as input.
So I thought it would be a good idea to put it in the <configfiles> 
tag, to replace some of the variables.
Quick example :
....
<inputs>
<param name="posfile" type="data" label="Posfile" help="Posfile you 
want to input to POSGEN" format="pos" />
</inputs>
<configfiles>
    <configfile name="loadTestxml">
<!DOCTYPE crystal SYSTEM "/usr/share/sgml/crystal.dtd">
<!--- Load a pos file called "babla.pos" -->
<crystal>
<version value="0.0.1"/>
<posload name="${posfile}"/>
</crystal>
     </configfile>
 </configfiles>
....
But when I load the tool configuration, it seems that the XML in 
<configfile> is interpreted, and/or I don't get anything in the input 
file.
Is there a way to do what I want ?
Cheers,
--
David