David Hoover wrote:
I am having great difficulty installing rpy (v1.0.3) for our local Galaxy installation. Is rpy actually supported for Galaxy? Should I even bother trying to install rpy?
Hi David, Yes, many of the tools in Galaxy still use rpy. It has not been updated for recent versions of R, but still works with them with a few modifications. These are: Line 77 of src/RPy.h, remove the include of <Rdevices.h>. Line 101 of rpy_tools.py, modify the version string regexp to: " +([0-9]\.[0-9]+\.[0-9])" If you encounter additional problems after making these changes, please provide specific error messages. Progress is being made to migrate tools away from rpy to rpy2 or standalone R scripts, but this has not yet been completed. Thanks, --nate
David Hoover Helix Systems Staff http://helix.nih.gov _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev