Hey all,

I am currently trying to install Gemini (v0.18.1) via the test toolshed.
It finally fails in dependencies as 'package_gemini_0_18_1' finds
dependency 'gemini' to end in error state. There the message looks like
the following:

---
2016-02-11 16:34:47 (72.4 MB/s) - `Miniconda-latest-Linux-x86_64.sh' saved
[25416725/25416725]

Python 2.7.11 :: Continuum Analytics, Inc.
Traceback (most recent call last):
  File "gemini_install.py", line 190, in <module>
    main(parser.parse_args())
  File "gemini_install.py", line 80, in main
    gemini = install_conda_pkgs(anaconda, remotes, args)
  File "gemini_install.py", line 97, in install_conda_pkgs
    urllib.urlretrieve(remotes["requirements_conda"], filename=req_file)
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/urllib.py", line
98, in urlretrieve
    return opener.retrieve(url, filename, reporthook, data)
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/urllib.py", line
245, in retrieve
    fp = self.open(url, data)
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/urllib.py", line
213, in open
    return getattr(self, name)(url)
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/urllib.py", line
443, in open_https
    h.endheaders(data)
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/httplib.py", line
1049, in endheaders
    self._send_output(message_body)
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/httplib.py", line
893, in _send_output
    self.send(msg)
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/httplib.py", line
855, in send
    self.connect()
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/httplib.py", line
1274, in connect
    server_hostname=server_hostname)
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/ssl.py", line 352,
in wrap_socket
    _context=self)
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/ssl.py", line 579,
in __init__
    self.do_handshake()
  File "/home/galaxy/tool_libs/python2.7/lib/python2.7/ssl.py", line 808,
in do_handshake
    self._sslobj.do_handshake()
IOError: [Errno socket error] [SSL: UNKNOWN_PROTOCOL] unknown protocol
(_ssl.c:590)
---

Some browsing at Google brought hints on three common cases where this
could appear *plus* a fourth one which looks by error code pretty much
what I got:

http://blog.techstacks.com/2010/03/3-common-causes-of-unknown-ssl-protocol-errors-with-curl.html

So, may I be right that there is a typo in an URL needed for downloading
during the setup process? Or is it, according to
http://stackoverflow.com/questions/10667960/python-requests-throwing-up-sslerror
due to some failed SSL certificate check?

Some help (or ideas for targeted checking) would be great :).

Cheers,
Sebastian

--
Sebastian Schaaf, M.Sc. Bioinformatics
Faculty Coordinator NGS Infrastructure
Chair of Biometry and Bioinformatics
Department of Medical Informatics,
 Biometry and Epidemiology (IBE)
University of Munich
DKTK Munich
Marchioninistr. 15, K U1 808
D-81377 Munich (Germany)
Tel: +49 89 4400 77499

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