Hmm, ok this tool shed is all new to me.  I followed the instructions
until when I click on the "preview and install", I get this error:

Not Found

The resource could not be found.
No action for /admin_toolshed/prepare_for_install

On Thu, Sep 13, 2012 at 2:51 PM, Greg Von Kuster <greg@bx.psu.edu> wrote:

Hi Paul,

It seems that you probably did not use the Emboss tools in your local Galaxy instance before (maybe you have a new instance).  If this is the case, you can install the emboss_datatypes repository and the emboss_5 repository from the main Galaxy tool shed using the Admin UI features on your local galaxy instance.  See the following sections of the tool shed wiki for details.

http://wiki.g2.bx.psu.edu/Tool%20Shed#Automatic_installation_of_Galaxy_tool_shed_repository_tools_into_a_local_Galaxy_instance

http://wiki.g2.bx.psu.edu/Tool%20Shed#Automatic_installation_of_Galaxy_tool_shed_repository_data_types_into_a_local_Galaxy_instance

Greg Von Kuster

On Sep 13, 2012, at 4:46 PM, Paul Tanger wrote:

Hi,

I'm trying to enable all the emboss tools on a local galaxy install.

I found this tidbit (below) which I thought might help, but when I

look at the tool_conf.xml, I don't see a list of emboss tools to

uncomment.

What should I try next?

Kelly Vincent kpvincent at bx.psu.edu

Fri Jan 14 11:26:37 EST 2011

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Rob,

When you start the Galaxy server, it looks in tool_conf.xml for which

tools to load. Note that functional tests use tool_conf.xml.sample,

and we leave the EMBOSS tools commented out in that file, so your

tool_conf.xml file will still have them commented out if you haven't

changed that. Uncomment the relevant lines and the EMBOSS tools should

show up. After making changes to tool_conf.xml, you'll have to restart

the server.

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