On Dec 7, 2012, at 6:05 PM, Coldren, Christopher D wrote:
Galaxy dev:
I'm installing a local galaxy instance (Dec 4, 2012 vintage) and it is running well under mySQL, but I'm having trouble getting it to work with a postgres database.
I've done the following to create the db and provide permissions:
$ whoami galaxy $ createdb galaxy_prod4 $ psql galaxy_prod4 psql (8.4.13) Type "help" for help. galaxy_prod4=# CREATE ROLE galaxy_prod_role4 WITH PASSWORD 'milkweed'; CREATE ROLE galaxy_prod4=# GRANT ALL PRIVILEGES ON DATABASE galaxy_prod4 to galaxy_prod_role4; GRANT galaxy_prod4=# ALTER ROLE galaxy_prod_role4 LOGIN; ALTER ROLE galaxy_prod4=# \du List of roles Role name | Attributes | Member of -------------------+--------------+----------- galaxy | Superuser | {} : Create role : Create DB galaxy_prod_role | Cannot login | {} galaxy_prod_role4 | | {} mydb_role | Cannot login | {} mydb_user | | {} postgres | Superuser | {} : Create role : Create DB galaxy_prod4=# \l List of databases Name | Owner | Encoding | Collation | Ctype | Access privileges --------------+----------+----------+-------------+-------------+------------------------------ galaxy_prod3 | galaxy | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =Tc/galaxy : galaxy=CTc/galaxy : galaxy_prod_role=CTc/galaxy galaxy_prod4 | galaxy | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =Tc/galaxy : galaxy=CTc/galaxy : galaxy_prod_role4=CTc/galaxy postgres | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | template0 | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =c/postgres : postgres=CTc/postgres template1 | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =c/postgres : postgres=CTc/postgres (5 rows)
Looks promising, right?
My universe_wsgi.ini has the following entry:
database_connection = postgres:///galaxy_prod_role4:milkweed@127.0.0.1:5432/galaxy_prod4
Hi Chris, You're a field off in your URL, try this: postgres://galaxy_prod_role4:milkweed@127.0.0.1:5432/galaxy_prod4 --nate
and started the application, but it failed with:
OperationalError: (OperationalError) FATAL: database "galaxy_prod_role4:milkweed@127.0.0.1:5432/galaxy_prod4" does not exist
commenting the database_connection line out allows galaxy to start, using mySQL I presume. Any ideas? This is my first time configuring something like this.
Thank you! Chris ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: