Hi Hans!

I try to clarify my problem:

The user selects a reference genome from <param name="reference" type="select" label="Select a reference genome" help="">.

So in my scenario the value for $sReference.reference will be either "mm9_64" or "hg19". This value is needed

to filter the supported reference annotations in case the user wants cuffcompare to be run. That’s why I need

<filter type="param_value" ref="sReference.reference" column="0"/>

I hope this brings some light in my problem ;-)

Cheers,

Sascha

Hi Sascha

I don’t quite understand your question...

$sReference.ref is the variable you are looking for, isn’t-it?


Regards, Hans

On 09/04/2012 11:40 AM, Sascha Kastens wrote:
> Hi all!
>
> I am facing a simple problem but can’t find a solution to solve it.
>
> Before I start describing my problem here is the code from my tool:
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>     falsevalue="no" label="Run Cuffcompare?" help="" />
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>         help="" >
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>              column="0"/>
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>           label="Select the reference annotation" />
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>        
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> As you might see from the code above I am trying to filter the contents
> for
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> based on the selected value in  label="Select a reference genome" help="">
>
> (). As
> soon as I try to load this configuration
>
> I get the error KeyError: ’sReference.reference’. So it seems, that the
> tool cannot access the key sReference.reference. I figured out that the
> tool can access only the "top"
>
> key from the conditional, i.e. I can use ref="sReference" column="0"/> and no error appears while reloading the
> tools config. But this
>
> is not useful because sReference does not contain any value for filtering.
>
> Does anybody know how the tool can access variables/keys under a
> conditonal tag without being within the conditional tag itself?
>
> Thanks for any help/hints/advice!
>
> Cheers,
>
> Sascha
>
>
>
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