On 9/06/2015, at 3:15 pm, Martin Čech <marten@bx.psu.edu> wrote:

The script by default expects Galaxy config to be at config/galaxy.ini if you have Galaxy config in a diffferent place you can use the --config flag to specify path to it.

The config location has been recently changed (from galaxy root folder and a different filename) - that is why the defaults are different then your setup. Sorry for the inconvenience.

Martin

On Mon, Jun 8, 2015 at 9:43 PM Shane Sturrock <shane@biomatters.com> wrote:

I recently updated our server to the latest release and have just had a user who ran up a lot of space and isn’t seeing it come back when she purges her data. I’ve tried using the set_user_disk_usage.py script as I’ve previously done to resolve this but now it is failing with the following:

(galaxy_env)[galaxy@galaxy scripts]$ ./set_user_disk_usage.py 
Loading Galaxy model...
Traceback (most recent call last):
  File "./set_user_disk_usage.py", line 85, in <module>
    model, object_store, engine = init()
  File "./set_user_disk_usage.py", line 43, in init
    for key, value in config_parser.items( "app:main" ):
  File "/usr/lib64/python2.6/ConfigParser.py", line 565, in items
    raise NoSectionError(section)
ConfigParser.NoSectionError: No section: ‘app:main'

Do I need a newer python or is this a bug/regression?

Shane

Dr. Shane Sturrock
Senior Scientist
shane.sturrock@biomatters.com | P: +64 9 379 5064
BIOMATTERS

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