For a genome such as "nt", then you will want all of the files
starting with "nt" in this directory. Use the ones ending in "md5"
to double check that the download was complete for each.
If you are looking to just including the databases on the Public
Main Galaxy server, there are three from this division: nt, htgs,
and wgs. You can of course pick these or any others that you want
for your own local.
I have some questions about the tool of Megablast in
NGS:Mapping when I download the needed indexes .
,nt 28-Jan-2013,wgs
28-Jan-2013,phiX174;but there are too many types of the
indexes file in ftp://ftp.ncbi.nlm.nih.gov/blast/db/ ,for
example : nt.00.tar.gz,nt.01.tar.gz,nt.02.tar.gz....I don't
know the differents among these files ,and I don't which one
I should choose to download.In addition ,I can't find the
index file for phiX174.
Could anyone help me and give me some advice please? Thank
you very much.
shenwiyn
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