Sorry, forgot to CC the list.
---------- Forwarded message ----------
From: Peter Cock
Date: Tuesday, September 25, 2012
Subject: [galaxy-dev] problem installing blast_datatypes manually
To: Liisa Koski <liisa.koski@basf.com>
On Tuesday, September 25, 2012, Liisa Koski wrote:
Hello,
I followed the instructions below to manually install the blast_datatypes:
Manual Installation
===================
Normally you would install this via the Galaxy ToolShed, which would move
the provided blast.py file into a suitable location and process the
datatypes_conf.xml entry to be combined with your local configuration.
However, if you really want to this should work for a manual install. Add
the following line to the datatypes_conf.xml file in the Galaxy main folder:
<datatype extension="blastxml" type="galaxy.datatypes.blast:BlastXml" mimetype="application/xml" display_in_upload="true"/>
Also create the file lib/galaxy/datatypes/blast.py by moving, copying or linking
the blast.py file provided in this tar-ball. Finally add 'import blast' near
the start of file lib/galaxy/datatypes/registry.py (after the other import
lines).
=========================
I restarted my local Galaxy instance but still get this error.
WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype 'galaxy.datatypes.xml:BlastXml' to sniff_order: 'module' object has no attribute 'BlastXml'
Any help would be much appreciated.
Thanks,
Liisa