Hey,
My bad I didn't see the patch and thought you had wanted me to revert to the Sept 12 release for that function. I now applied the patch, and am seeing the correct error when clicking the bug button. If I encounter any issue I will post back.Date: 03/12/2013 10:15AM
Cc: "galaxy-dev@bx.psu.edu" <galaxy-dev@bx.psu.edu>, Jean-Francois Payotte <jean-francois.payotte@dnalandmarks.ca>
Subject: Re: [galaxy-dev] Error Report contains STDERR from different jobThanks, EricSince the HDA is None, the if statement should be sending you the trans.show_error_message.Just to make sure we're on the same page, could you please attach or post the errors method from the dataset controller in your installation. It can be found at lib/galaxy/webapps/galaxy/controllers/dataset.py?CarlOn Tue, Mar 12, 2013 at 10:59 AM, Eric Enns <eric.enns@phac-aspc.gc.ca> wrote:
callable _(context, *args, **kwargs)The following is the stack trace I got when I applied the patch and clicked the bug icon.
"GET /dataset/errors?id=c39bc73d0eae67dd HTTP/1.0" 500 - "http://galaxy/history"
Error - <type 'exceptions.AttributeError'>: 'NoneType' object has no attribute 'hid'
URL: http://galaxy/dataset/errors?id=c39bc73d0eae67dd
File '/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call_ _
app_iter = self.application(environ, start_response)
File '/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__
return self.application(environ, start_response)
File '/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__
return self.application(environ, start_response)
File '/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__
return self.handle_request( environ, start_response )
File '/galaxy-dist/lib/galaxy/web/framework/base.py', line 185 in handle_request
body = method( trans, **kwargs )
File '/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/dataset.py', line 175 in errors
return trans.fill_template( "dataset/errors.mako", hda=hda )
File '/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 848 in fill_template
return self.fill_template_mako( filename, **kwargs )
File '/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 859 in fill_template_mako
return template.render( **data )
File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/template.py', line 296 in render
return runtime._render(self, self.callable_, args, data)
File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 660 in _render
**_kwargs_for_callable(callable_, data))
File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 692 in _render_context
_exec _template(inherit, lclcontext, args=args, kwargs=kwargs)
File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 718 in _exec_template
File '/galaxy-dist/database/compiled_templates/dataset/errors.mako.py', line 27 in render_body
__M_writer(unicode(hda.hid))
AttributeError: 'NoneType' object has no attribute 'hid'To: Eric Enns <eric.enns@phac-aspc.gc.ca>
From: Carl Eberhard <carlfeberhard@gmail.com>
Date: 03/12/2013 09:47AM
Cc: "galaxy-dev@bx.psu.edu" <galaxy-dev@bx.psu.edu>, Jean-Francois Payotte <jean-francois.payotte@dnalandmarks.ca>
Subject: Re: [galaxy-dev] Error Report contains STDERR from different jobCan you post the stack trace from the error, please?Thanks for the info,CarlOn Tue, Mar 12, 2013 at 10:37 AM, Eric Enns <eric.enns@phac-aspc.gc.ca> wrote:
Hey,
I applied the patch and it does not help, instead I received a server error since hda was none. If it helps at all I am using mysql as my backend.
-Eric
-----Carl Eberhard <carlfeberhard@gmail.com> wrote: -----To: Jean-Francois Payotte <jean-francois.payotte@dnalandmarks.ca>
From: Carl Eberhard <carlfeberhard@gmail.com>
Date: 03/08/2013 05:10PM
Cc: eric.enns@phac-aspc.gc.ca, "galaxy-dev@bx.psu.edu" <galaxy-dev@bx.psu.edu>
Subject: Re: [galaxy-dev] Error Report contains STDERR from different jobHello,Does applying the patch from "[galaxy-dev] Strange issue where the dataset reported in the bug report doesn't correspond to the current dataset" help?If not, we can diagnose further. Thanks,CarlOn Fri, Mar 8, 2013 at 3:35 PM, Jean-Francois Payotte <jean-francois.payotte@dnalandmarks.ca> wrote:
____ ______________________ ___ ________ ____________ _____ _____Dear Eric,
I'm glad to know that I am not the only one having this bug. (Even though I would prefer if neither of us would have it). ;)
I've already written twice to the galaxy mailing-list, but I didn't receive any answers so far.
Let's hope someone will be able to help us solve this issue.
You can see my mail thread here: http://dev.list.galaxyproject.org/Strange-issue-where-the-dataset-reported-in-the-bug-report-doesn-t-correspond-to-the-current-dataset-td4658707.html
Best regards,
Jean-Francois
From: Eric Enns <eric.enns@phac-aspc.gc.ca>
To: galaxy-dev@bx.psu.edu
Date: 08/03/2013 03:14 PM
Subject: [galaxy-dev] Error Report contains STDERR from different job
Sent by: galaxy-dev-bounces@lists.bx.psu.edu
-Eric_____________________ ______ _________________ _______ ________Hey,
When clicking the "View or report this error button" the error message shown occasionally is from a different job. If you go into the info for the job you can select stderr and see the correct error. If the user submits the error to admins they receive the wrong error message and a link to the wrong history.
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