But now i have a another question for giff to bed function.
i want to use gff-to-bed function after i run it, it seems that i got the results :
empty,
format:
bed,
database:
?
Info: 0 lines converted to BED. Skipped 74166 blank/comment/invalid lines starting with line #1.
i am using gff3 file.and it is the first few lines.
##gff-version 3
##genome-build MSU Rice Genome Annotation Project osa1r6
##species Oryza sativa spp japonica cv Nipponbare
##sequence-region Chr1 1 43268879
Chr1 MSU_osa1r6 gene 1903 9817 . + . ID=13101.t00001;Name=TBC%20domain%20containing%20protein%2C%20expressed;Alias=LOC_Os01g01010
Chr1 MSU_osa1r6 mRNA 1903 9817 . + . ID=13101.m00001;Parent=13101.t00001;Alias=LOC_Os01g01010.1
Chr1 MSU_osa1r6 five_prime_UTR 1903 2268 . + . Parent=13101.m00001
Chr1 MSU_osa1r6 five_prime_UTR 2354 2448 . + . Parent=13101.m00001