25 Apr
2013
25 Apr
'13
12:35 p.m.
On Thu, Apr 25, 2013 at 5:37 PM, Ramon Tiburski <ramao_tiago_tiburski@hotmail.com> wrote:
Hi Peter,
I have this: <command>filename $input $output</command>
And my executable and xml are in the same directory
Thank you
If you don't put the binary on the system $PATH, then you'll need to give an explicit path to it. You could try something like this in the short term while you are developing the tool: <command>/mnt/galaxy/tools/my_stuff/filename $input $output</command> If you intend to share this tool then you'll need to learn about how automatic dependency installation works via a tool_dependencies.xml file. Peter