Hello,

Some Galaxy tools failed to import rpy module and displays the following message:

Traceback (most recent call last):
 File "/usr/local/bioinfo/src/galaxy/galaxy-dist/tools/plotting/histogram.py", line 5, in <module>
   from rpy import *
ImportError: No module named rpy


For instance, the tool "Regrouping" (tools/stats/grouping.py) have been refactored in 2011 by Kanwei Li to use numpy instead of rpy. And this tool runs on my local instance of Galaxy.
But I would like to be able use rpy module instead of refactor the others tools.

Could you, please, help me to understand why the eggs ' import does not allow the use of rpy module? How to debug these tools?

Thnaks in advance,
Sarah


--
         --*--
Sarah Maman
INRA - LGC - SIGENAE
http://www.sigenae.org/
Chemin de Borde-Rouge - Auzeville - BP 52627
31326 Castanet-Tolosan cedex - FRANCE
Tel:   +33(0)5.61.28.57.08
Fax:   +33(0)5.61.28.57.53         --*--

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/