Dear list,

I am trying to write a test with a param type "select" and options "from_file".

I have the following param section in the wrapper:

<!-- Database Choice -->

<param name="ref_file" type="select" label="Using reference database" help="Select reference from the list">

        <options from_file="frogs_db.loc">

                <column name="name" index="0"/>

                <column name="value" index="1"/>

        </options>

</param>

And I  wrote the following test section:

<test>

        ...

        <param name="ref_file" value="db.fasta"/>

</test>

The planemo test command failed with the following message:

RunToolException: Error creating a job for these tool inputs - Parameter ref_file requires a value, but has no legal values defined.

Looking at the planemo documentation I saw the entry "test index (.loc) data": http://planemo.readthedocs.io/en/latest/writing_how_do_i.html#test-index-loc-data

but it seems to work with <options from_data_table>.

Have you any test example working with <options from_file> ?

Thanks for your help.

Olivier

Olivier INIZAN

olivier.inizan@inra.fr

Unité Mathématiques & Informatique Appliquées du Génome à l'Environnement
Plateforme bioinformatique Migale
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Domaine de Vilvert
78352 Jouy-en-Josas