Thanks Marina this works perfectly, everything fully operational now very glad for your help!<br><br>-Leandro<br><br><div class="gmail_quote">On Thu, May 19, 2011 at 2:23 PM, Marina Gourtovaia <span dir="ltr">&lt;<a href="mailto:mg8@sanger.ac.uk">mg8@sanger.ac.uk</a>&gt;</span> wrote:<br>
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    Hi Leandro<br>
    <br>
    I do not think the binding is env var aware. I used the following
    string in Galaxy drmaa configuration in universe_wsgi.ini<br>
    <br>
    default_cluster_job_runner = drmaa://-q srpipeline -P pipeline/<br>
    <br>
    -q for the queue and -P for the project<br>
    <br>
    Marina<div><div></div><div class="h5"><br>
    <br>
    <br>
    On 19/05/2011 12:54, Leandro Hermida wrote:
    <blockquote type="cite">
      
      Hi Marina,<br>
      <br>
      Thank you so much for your help, LSF DRMAA is working fine with
      Galaxy now.<br>
      <br>
      One final problem though... if I specify the env var
      LSB_DEFAULTQUEUE to a specific queue the Galaxy server appears in
      the log to submit the job but it doesn&#39;t ever seem to get executed
      and looking in LSF with bjobs -u all we don&#39;t see any galaxy
      submitted jobs, strange.  Is there something I am not setting up
      right with the particular queue?<br>
      <br>
      best,<br>
      Leandro<br>
      <br>
    </blockquote>
  
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