Re: [galaxy-dev] Error uploading file

Dijk, F van wrote:

We are running Galaxy on our local server(linux 64 bit) and try to upload a file (fasta, fastq) to the application. This returns the following error:

Hi Freerk, This is a bug in our Python dependency handling code. Do you have a copy of SQLAlchemy installed in your $PYTHONPATH or in your Python's site-packages? Something about the way it's installed is causing our version conflict code to fail to find and override it. This bug has been floating around for a while and I'm never able to cause such conflicts myself, so it's been difficult to fix. The quick solution is to remove the conflicting copy of SQLAlchemy, but if you can spare me a few minutes to troubleshoot, that would be a great help. Thanks, --nate