I am a student of Bs Bioinformatics. I have been using the open source galaxy platform to integrate tool and make a work flow as my Final semester project. My supervisor happens to be ill and thus is unable to facilitate me in any respect. I here by take this opportunity to request that If any of you could help me fixing my problem. I would extremely grateful.

The PROBLEM
http://bitbucket.org/galaxy/galaxy-central/wiki/ExternalDisplayApplications/Tutorial

The URL has an explanation concerning BAM and BAI files. the explanation on the URL are a little vague to me so if any one of you could kindly further elaborate. I am having problems in displaying the results of my added tools on the interface. The tools run and three output files are created but the Galaxy takes them as errors.

If you could identify or sent a protocol which could help me fixing this problem.

Regards

Aeman..