Hi Looks like the argument list should be longer. Marina
I am forwarding your question to the Galaxy Dev list, which is the best place to ask this type of question.
Dave C
On Tue, Dec 28, 2010 at 11:27 PM,<gilgi.friedlander@weizmann.ac.il> wrote:
Hi,
I am trying to run locally the fastq_groomer.py
My command:
python /usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py seq.txt illumina seq_out.txt sanger
seq.txt is a fastq file with Illumina qualities.
I get the following error:
Traceback (most recent call last): File "/usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py", line 37, in<module> if __name__ == "__main__": main() File "/usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py", line 10, in main force_quality_encoding = sys.argv[5] IndexError: list index out of range
Does anyone know what the problem is?
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