Hi Martin, Is there anything in the syslog? --nate On Thu, Jul 16, 2015 at 11:26 AM, Martin Vickers <mjv08@aber.ac.uk> wrote:
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Hi All,
I have a weird issue that's just cropped up. After a new install of galaxy (checked out on Monday from github) on a ubuntu vm, using postgres rather than sqlite as well as a few other production recommendations, I started playing around with the Data Libraries functionality. I linked a bunch of fastq.gz files into galaxy (around 150 in total) and everything was working fine. I went home and the next day, it was down.
I tried to start it up as usual (using an init.d script), it worked for less than a minute and then disappeared again. So I tried running it as the galaxy user using ./run.sh and I get a seg fault;
Starting server in PID 23173. serving on http://144.124.110.39:8080 Segmentation fault
Tried again with strace
Starting server in PID 23552. serving on http://144.124.110.39:8080 [{WIFSIGNALED(s) && WTERMSIG(s) == SIGKILL}], 0, NULL) = 23552 - --- SIGCHLD {si_signo=SIGCHLD, si_code=CLD_KILLED, si_pid=23552, si_status=SIGKILL, si_utime=1590, si_stime=1930} --- rt_sigreturn() = 23552 write(2, "Killed\n", 7Killed ) = 7 read(10, "", 8192) = 0 exit_group(137) = ? +++ exited with 137 +++
I can't see anything odd in the log file and I've turned debugging on in galaxy.ini. I'm at a bit of a loss. Does anyone know what might be causing it?
Cheers,
- -- Dr. Martin Vickers
Data Manager/HPC Systems Administrator Institute of Biological, Environmental and Rural Sciences IBERS New Building Aberystwyth University
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