Hello gents,

I would greatly appreciate some help configuring my new installation of galaxy 18.05.

I found most of the configuration I needed but I’m missing the following configuration in green.

Here is my galaxy 17.05:

[galaxy@esilbac3a ~]$ diff galaxy-17.05/config/galaxy.ini  galaxy-17.05/config/galaxy.ini.sample

32c32

< port = 7112

---

> #port = 8080

37c37

< host = 0.0.0.0

---

> #host = 127.0.0.1

50,59d49

< # ---- HTTP PBS DRMAA HANDLER -----------------------------------------------

<

< # Configuration of the pbs drmaa handler

<

< [server:handler0]

< use = egg:Paste#http

< port = 8088

< use_threadpool = True

< threadpool_workers = 10

<

74c64

< prefix = /galaxy-prod

---

> prefix = /galaxy

95c85

< filter-with = proxy-prefix

---

> #filter-with = proxy-prefix

109c99

< database_connection = mysql://galaxy:qaz1wsx2@localhost/galaxy_db_prod2?unix_socket=/var/lib/mysql/mysql.sock

---

> #database_connection = sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE

119c109

< database_engine_option_pool_recycle = 7200

---

> #database_engine_option_pool_recycle = -1

152c142

< file_path = /home/galaxy/galaxy-prod/database/files

---

> #file_path = database/files

155c145

< new_file_path = /home/galaxy/galaxy-prod/database/tmp

---

> #new_file_path = database/tmp

161c151

< tool_config_file = /home/galaxy/galaxy-prod/config/tool_conf.xml,/home/galaxy/galaxy-prod/config/shed_tool_conf.xml

---

> #tool_config_file = config/tool_conf.xml,config/shed_tool_conf.xml

197c187

< tool_dependency_dir = /home/galaxy/galaxy-prod/tool-data/toolshed.dependency.dir

---

> #tool_dependency_dir = database/dependencies

401c391

< job_working_directory = /home/galaxy/galaxy-prod/database/jobs_directory

---

> #job_working_directory = database/jobs_directory

466c456

< smtp_server = smtp.umontreal.ca:25

---

> #smtp_server = None

475c465

< smtp_ssl = False

---

> #smtp_ssl = False

486c476

< error_email_to = edgar.fernandez@umontreal.ca

---

> #error_email_to = None

493c483

< email_from = Galaxy ESI Project <rootbac@esi.umontreal.ca>

---

> #email_from = None

679c669

< apache_xsendfile = True

---

> #apache_xsendfile = False

693c683

< upstream_gzip = False

---

> #upstream_gzip = False

848c838

< debug = False

---

> #debug = False

861c851

< use_interactive = False

---

> use_interactive = True

989c979

< id_secret = 3s1G@l@xyPr0j3ct

---

> #id_secret = USING THE DEFAULT IS NOT SECURE!

1038c1028

< admin_users = rootbac@esi.umontreal.ca

---

> #admin_users = None

1041c1031

< require_login = True

---

> #require_login = False

1049c1039

< allow_user_creation = False

---

> #allow_user_creation = True

1052c1042

< allow_user_deletion = True

---

> #allow_user_deletion = False

1055c1045

< allow_user_impersonation = True

---

> #allow_user_impersonation = False

1060c1050

< allow_user_dataset_purge = True

---

> #allow_user_dataset_purge = True

1066c1056

< new_user_dataset_access_role_default_private = True

---

> #new_user_dataset_access_role_default_private = False

1200c1190

< enable_quotas = True

---

> #enable_quotas = False

1234c1224

< job_config_file = /home/galaxy/galaxy-prod/config/job_conf.xml

---

> #job_config_file = config/job_conf.xml

1292c1282

< retry_job_output_collection = 20

---

> #retry_job_output_collection = 0

1310c1300

< cleanup_job = onsuccess

---

> #cleanup_job = always

Please help me find what I am missing.

Best regards,

Edgar Fernandez

Administrateur Système (Linux)

Technologies de l'Information

Université de Montréal

PAVILLON ROGER-GAUDRY, bureau X-210

(  Bur. : 1-514-343-6111 poste 16568