Hi Carl,
Thanks for the quick response. Here it is:
On Wed, Jan 23, 2013 at 2:14 PM, Carl Eberhard <carlfeberhard@gmail.com> wrote:
> Heya, Dan.
>
> Sorry for the trouble.
> When you get that error again look for a line like you have above:
> Debug at: http://localhost:8080/_debug/view/1358978130
>
> If you open a new tab or window in your browser and go to the address
> ('http://localhost:8080/_debug ...'), you should see a more informative
> error message - complete with a list of function calls that led to the error
> (a stack trace).
>
> Can you post that stack trace when you see it?
>
URL: http://localhost:8080/tool_runner/upload_async_create
File '/Users/dtenenba/dev/galaxy-dist/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py',
line 364 in respond
app_iter = self.application(environ, detect_start_response)
File '/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/debug/prints.py',
line 98 in __call__
environ, self.app)
File '/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/wsgilib.py',
line 539 in intercept_output
app_iter = application(environ, replacement_start_response)
File '/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/recursive.py',
line 80 in __call__
return self.application(environ, start_response)
File '/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py',
line 632 in __call__
return self.application(environ, start_response)
File '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/web/framework/base.py',
line 160 in __call__
body = method( trans, **kwargs )
File '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/web/framework/__init__.py',
line 73 in decorator
return simplejson.dumps( func( self, trans, *args, **kwargs ) )
File '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/tool_runner.py',
line 317 in upload_async_create
datasets.append( create_dataset( name ) )
File '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/tool_runner.py',
line 287 in create_dataset
return upload_common.new_upload( trans, cntrller, ud,
library_bunch=library_bunch,
state=trans.app.model.HistoryDatasetAssociation.states.UPLOAD )
File '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/tools/actions/upload_common.py',
line 213 in new_upload
return new_history_upload( trans, uploaded_dataset, state )
File '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/tools/actions/upload_common.py',
line 118 in new_history_upload
hda.state = state
File '/Users/dtenenba/dev/galaxy-dist/lib/galaxy/model/__init__.py',
line 1048 in set_dataset_state
object_session( self ).add( self.dataset )
AttributeError: 'NoneType' object has no attribute 'add'
Dan
> We can take it from there and thanks,
> Carl
>
>
> On Wed, Jan 23, 2013 at 5:04 PM, Dan Tenenbaum <dtenenba@fhcrc.org> wrote:
>>
>> Hi,
>>
>> I installed galaxy completely from scratch:
>>
>> rm -rf galaxy-dist && hg clone https://bitbucket.org/galaxy/galaxy-dist/
>>
>> I'm not a mercurial expert but I think I have changeset
>> 8530:a4113cc1cb5e; at least that's the first entry in "hg log".
>>
>> Then started galaxy like this:
>> cd galaxy-dist
>> ./run.sh
>>
>> I went to http://localhost:8080 and tried to upload a file. I never
>> saw the file in my history, and this is what printed out in the
>> console after I clicked "Execute" on the "Upload File" page:
>>
>> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
>> returned None from get_history():
>> http://localhost:8080/tool_runner/upload_async_create
>> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
>> returned None from get_history():
>> http://localhost:8080/tool_runner/upload_async_create
>> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
>> returned None from get_history():
>> http://localhost:8080/tool_runner/upload_async_create
>> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
>> returned None from get_history():
>> http://localhost:8080/tool_runner/upload_async_create
>> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
>> returned None from get_history():
>> http://localhost:8080/tool_runner/upload_async_create
>> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
>> returned None from get_history():
>> http://localhost:8080/tool_runner/upload_async_create
>> galaxy.web.framework DEBUG 2013-01-23 13:56:11,573 Error: this request
>> returned None from get_history():
>> http://localhost:8080/tool_runner/upload_async_create
>> galaxy.web.framework DEBUG 2013-01-23 13:56:11,574 Error: this request
>> returned None from get_history():
>> http://localhost:8080/tool_runner/upload_async_create
>> galaxy.web.framework DEBUG 2013-01-23 13:56:11,574 Error: this request
>> returned None from get_history():
>> http://localhost:8080/tool_runner/upload_async_create
>> 127.0.0.1 - - [23/Jan/2013:13:56:11 -0700] "POST
>> /tool_runner/upload_async_create HTTP/1.1" 500 -
>> "http://localhost:8080/" "Mozilla/5.0 (Macintosh; Intel Mac OS X
>> 10_8_2) AppleWebKit/537.17 (KHTML, like Gecko) Chrome/24.0.1312.56
>> Safari/537.17"
>> Debug at: http://localhost:8080/_debug/view/1358978130
>> 127.0.0.1 - - [23/Jan/2013:13:56:11 -0700] "GET
>> /tool_runner/upload_async_message HTTP/1.1" 200 -
>> "http://localhost:8080/" "Mozilla/5.0 (Macintosh; Intel Mac OS X
>> 10_8_2) AppleWebKit/537.17 (KHTML, like Gecko) Chrome/24.0.1312.56
>> Safari/537.17"
>> 127.0.0.1 - - [23/Jan/2013:13:56:11 -0700] "GET /history HTTP/1.1" 200
>> - "http://localhost:8080/tool_runner/upload_async_message"
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_2) AppleWebKit/537.17
>> (KHTML, like Gecko) Chrome/24.0.1312.56 Safari/537.17"
>>
>> Hope someone can help.
>> Thanks,
>> Dan
>> ___________________________________________________________
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>
>