Hi all,

I'm installing the latest revision of Picard tools (efc56ee1ade4). Picard installs successfully, and the tools are appearing in the appropriate menu, but several packages that install with Picard are reporting dependency issues, and I'm concerned that not all the tools will work appropriately. The tools reporting issues are:

package_cairo_1_12_14 (last lines of long warning/error sequence)

/vectorbase/web/Galaxy/galaxy-dist/dependency_dir/libpng/1.6.7/devteam/package_libpng_1_6_7/f48b920cae1f/lib: file not recognized: Is a directory
collect2: ld returned 1 exit status
make[3]: *** [libcairo.la] Error 1
make[2]: *** [all] Error 2
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

package_pixman_0_32_4

/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start':
(.text+0x20): undefined reference to `main'
collect2: ld returned 1 exit status
make[2]: *** [clip-test] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

package_readline_6_2

Error downloading from URL
ftp://ftp.gnu.org/gnu/readline/readline-6.2.tar.gz:
<urlopen error ftp error: [Errno 110] Connection timed out>

Is anyone else having issues with these packages? Any suggestions for resolving these problems?

Thanks!

Scott B. Szakonyi

Research Programmer

Center for Research Computing
107 Information Technology Center
Notre Dame, IN 46556
http://crc.nd.edu