11 Sep
2013
11 Sep
'13
6:22 p.m.
Vipin, Search works pretty well on the toolshed - I'd recommend a search for (eg) 'star' before writing yet another rnastar toolshed wrapper and dependency package? There's an installable fubar package_rnastar and an rnastar wrapper based on Jeremy's code mentioned below - but working AFAIK - at least it installs and works fine here and on the GVL. On Thu, Sep 12, 2013 at 1:49 AM, Jeremy Goecks <jeremy.goecks@emory.edu>wrote:
STAR aligner
I have a partial STAR wrapper that may be useful: https://bitbucket.org/jgoecks/jeremys-code/src/d7096c132657420f08b540c6954b9...
Whether you use this code or not, I do have one request: please put the output in BAM rather than SAM format in order to save disk space.
Best, J.