2015-06-29 15:23 GMT-05:00 John Chilton <jmchilton@gmail.com>:Do you have a ~/.planemo.yml file? I think probably yes based on the
previous exception. Can you replace passwords and keys with XXXX and
send me a copy of that as well as the command-line that produced the
above output?
-John
On Mon, Jun 29, 2015 at 12:05 PM, Alexander Vowinkel
<vowinkel.alexander@gmail.com> wrote:
> Thanks,
>
> now I get the following directly after the diff output:
>
>> Could not update stacks
>> object of type 'NoneType' has no len()
>>
>> /usr/local/lib/python2.7/dist-packages/requests/packages/urllib3/connectionpool.py:768:
>> InsecureRequestWarning: Unverified HTTPS request is being made. Adding
>> certificate verification is strongly advised. See:
>> https://urllib3.readthedocs.org/en/latest/security.html
>> InsecureRequestWarning)
>>
>> /usr/local/lib/python2.7/dist-packages/requests/packages/urllib3/connectionpool.py:768:
>> InsecureRequestWarning: Unverified HTTPS request is being made. Adding
>> certificate verification is strongly advised. See:
>> https://urllib3.readthedocs.org/en/latest/security.html
>> InsecureRequestWarning)
>> Repository metadata updated.
>> Failed to update a repository.
>
>
> What does that mean?
>
> Best,
> Alexander
>
> 2015-06-29 10:41 GMT-05:00 John Chilton <jmchilton@gmail.com>:
>>
>> Thanks for the bug report. I have fixed this problem here
>>
>> (https://github.com/galaxyproject/planemo/commit/a32d082eeee0a6b856d8d15c9619c97549230a17)
>> and released a new version of planemo (0.13.0) with fix. Hopefully you
>> will get a better error message after the upgrade if there is still a
>> configuration issue.
>>
>> -John
>>
>> On Sat, Jun 27, 2015 at 6:32 AM, Björn Grüning
>> <bjoern.gruening@gmail.com> wrote:
>> > Hi Alexander,
>> >
>> > I have opend an issue:
>> > https://github.com/galaxyproject/planemo/issues/240
>> >
>> > Thanks for reporting,
>> > Bjoern
>> >
>> > Am 27.06.2015 um 07:11 schrieb Alexander Vowinkel:
>> >> Hi,
>> >>
>> >> I'm running:
>> >>
>> >> planemo shed_update --check_diff --shed_target toolshed
>> >>
>> >>
>> >> and get a python error message (see below).
>> >>
>> >> shed_diff and shed_lint are working fine.
>> >> planemo, version 0.12.2
>> >>
>> >> Best,
>> >> Alexander
>> >>
>> >>
>> >> Traceback (most recent call last):
>> >>> File "/usr/local/bin/planemo", line 11, in <module>
>> >>> sys.exit(planemo())
>> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line
>> >>> 664,
>> >>> in __call__
>> >>> return self.main(*args, **kwargs)
>> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line
>> >>> 644,
>> >>> in main
>> >>> rv = self.invoke(ctx)
>> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line
>> >>> 991,
>> >>> in invoke
>> >>> return _process_result(sub_ctx.command.invoke(sub_ctx))
>> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line
>> >>> 837,
>> >>> in invoke
>> >>> return ctx.invoke(self.callback, **ctx.params)
>> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line
>> >>> 464,
>> >>> in invoke
>> >>> return callback(*args, **kwargs)
>> >>> File "/usr/local/lib/python2.7/dist-packages/click/decorators.py",
>> >>> line
>> >>> 64, in new_func
>> >>> return ctx.invoke(f, obj, *args[1:], **kwargs)
>> >>> File "/usr/local/lib/python2.7/dist-packages/click/core.py", line
>> >>> 464,
>> >>> in invoke
>> >>> return callback(*args, **kwargs)
>> >>> File
>> >>>
>> >>> "/usr/local/lib/python2.7/dist-packages/planemo/commands/cmd_shed_update.py",
>> >>> line 52, in cli
>> >>> tsi = shed.tool_shed_client(ctx, **kwds)
>> >>> File
>> >>> "/usr/local/lib/python2.7/dist-packages/planemo/shed/__init__.py",
>> >>> line 331, in tool_shed_client
>> >>> key = prop("key")
>> >>> File
>> >>> "/usr/local/lib/python2.7/dist-packages/planemo/shed/__init__.py",
>> >>> line 323, in prop
>> >>> return kwds.get("shed_%s" % key, None) or shed_config.get(key,
>> >>> None)
>> >>> AttributeError: 'NoneType' object has no attribute 'get'
>> >>
>> >>
>> >>
>> >> ___________________________________________________________
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>