Jorge,

I think that I omitted the igvtools index command because galaxy implicitly manages indexes for datasets
as as defined in the datatypes_conf.xml configuration file.

I could add the igvtools index command if the galaxy implicit indexing is not sufficient.

Thanks,

JJ

On 1/24/13 9:49 AM, Jorge Sepulveda MD, PhD wrote:

Hi, Jim,

I very much appreciate your galaxy wrappers for igvtools. I was wondering why you did not include the igvtools indexer. I tried to make a wrapper for it but it did not work. Your help will be much appreciated!

Jorge Sepulveda, MD, PhD

Associate Director for Laboratory Medicine,

Medical Director of Laboratory Informatics,

Columbia University Medical Center

Associate Professor,
Department of Pathology & Cell Biology

Columbia University College of Physicians and Surgeons
PH1590B
622 W 168 St
New York, NY 10032
Cell: (917) 862-6050
Office: 212-305-6360
E-mail:jls2282@columbia.edu