Hi Peter,

The code file tag is generally used in populating select lists. So basically you have a function from a code file that is loaded before runtime of the tool and you can dynamically load content based on that function and you can pass it parameters from your tool but I'm wondering how you would pass it the contents of a repeat parameter.

This is how the code file tag works:

https://wiki.galaxyproject.org/Admin/Tools/Custom%20Code

Thanks,

Katherine

On Thu, Sep 1, 2016 at 8:23 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:

I'm not quite sure what you mean by a "code file", but if you
mean using the <configfile> tag, here's an example:

https://github.com/peterjc/galaxy_mira/blob/master/tools/mira4_0/mira4_de_novo.xml

I am using a Cheetah syntax for loop to access each entry
in a repeat parameter.

Peter

On Thu, Sep 1, 2016 at 12:58 PM, Katherine Beaulieu
<katherine.beaulieu014@gmail.com> wrote:
> Hello Galaxy Community,
> I was wondering if anyone had ever come across a situation where they have
> had to pass the contents of a repeat parameter to a code file in a Galaxy
> tool config? Is there any way to do this?
> Katherine
>

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