Yeah, if you're running it with just `run.sh`, that should work fine.  One thing you can do if you're going to be tweaking a bunch of settings would be to run it with the reload option enabled `run.sh --reload`.

When you change the port in universe_wsgi.ini in the galaxy directory, kill the server and restart, in the log at the end you should see something like:
serving on 0.0.0.0:<new port> view at http://127.0.0.1:<new port>

If you're not seeing that, I'd verify that you're editing the correct universe_wsgi.ini.  Perhaps you have multiple galaxies installed somehow?



On Tue, Apr 9, 2013 at 9:39 AM, Tobias Hohenaur <hohenauer@brain.riken.jp> wrote:
I just hit ctrl c in the terminal to stop. Is that enough?
----- Original Message -----
>> From: Dannon Baker <dannon.baker@gmail.com>
>> To: Tobias Hohenaur <hohenauer@brain.riken.jp>
>> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev <galaxy-dev@lists.bx.psu.edu>
>> Date: 2013-04-09 22:30:38
>> Subject: Re: [galaxy-dev] How to be an admin?
>>
>> How is it that you're restarting the server?
>>
>> It might be useful to check galaxy's log to see what's going on -- this
>> would be paster.log in your galaxy directory or perhaps the foreground of
>> the terminal you're executing galaxy from.
>>
>> -Dannon
>>
>>
>> On Tue, Apr 9, 2013 at 9:25 AM, Tobias Hohenaur <hohenauer@brain.riken.jp>wrote:
>>
>> > That does not help. Actually, I tried to change random things in the
>> > universe_wsgi.ini, like setting the port to 8081, but none of the changes
>> > take effect when I restart the server. I am confused...
>> > ----- Original Message -----
>> > >> From: Peter Cock <p.j.a.cock@googlemail.com>
>> > >> To: Tobias Hohenaur <hohenauer@brain.riken.jp>
>> > >> Cc: galaxy-dev@lists.bx.psu.edu
>> > >> Date: 2013-04-07 23:28:31
>> > >> Subject: Re: [galaxy-dev] How to be an admin?
>> > >>
>> > >> On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur
>> > >> <hohenauer@brain.riken.jp> wrote:
>> > >> > Hello,
>> > >> >
>> > >> > I just installed and updated a local instance of Galaxy on my mac. I
>> > then
>> > >> > created a user and set the according username (email) as admin in the
>> > >> > universe_wsgi.ini file. When I save and restart the server no admin
>> > panel
>> > >> > appears. What am I doing wrong?
>> > >> > Thank you very much for your help!
>> > >> > Tobias
>> > >>
>> > >> Make sure you are logged in, and that the email address of your
>> > >> Galaxy account matches the universe_wsgi.ini setting exactly
>> > >> (case may be important). Also the setting used to have problems
>> > >> with extra white space (but I think that was fixed).
>> > >>
>> > >> Peter
>> > >>
>> > ___________________________________________________________
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>>
>>