Hello,

The Galaxy "Variant Annotator" tool uses this loc file : tool-data/gatk2_picard_indexes.loc

This file is available in tool-data/ directory and completed but the dropdown menu of "Variant Annotator" tool is empty.

more gatk2_picard_indexes.loc
#This is a sample file distributed with Galaxy...
oviAri1    oviAri1    Ovis:oviAri1    /bank/Galaxy/oviAri1/current/flat/picard_index/oviAri1.dict

ls /bank/Galaxy/oviAri1/current/flat/picard_index/
oviAri1.dict  oviAri1.fa  oviAri1.fa.fai


Could you please tell me where does my mistake ?

Kind regards,
Sarah Maman