Hi Nate,<br><br>I tried to run the tool with a small input file. Then that case also the test fails and returns the same error message. <br><br>FAIL: mGenePredict ( mgenepredict ) &gt; Test-1<br>----------------------------------------------------------------------<br>

Traceback (most recent call last):<br>  File &quot;/home/galaxy/galaxy-2.1.2009/test/functional/test_toolbox.py&quot;, line 114, in test_tool<br>    self.do_it()<br>  File &quot;/home/galaxy/galaxy-2.1.2009/test/functional/test_toolbox.py&quot;, line 54, in do_it<br>

    self.verify_dataset_correctness( file )<br>  File &quot;/home/galaxy/galaxy-2.1.2009/test/base/twilltestcase.py&quot;, line 323, in verify_dataset_correctness<br>    if wait: self.wait() #wait for job to finish<br>  File &quot;/home/galaxy/galaxy-2.1.2009/test/base/twilltestcase.py&quot;, line 617, in wait<br>

    self.assertNotEqual(count, maxiter)<br>AssertionError: 20 == 20<br><br>Also I can find that the job is not finished even though I got the fail message. I confirmed the same, when I run the test again it produces an error message stating that the Galaxy port is already in use.<br>

<br>I hope my assumption is true, if not please let me know.<br><br>Many thanks,<br>Vipin T S<br>