On Wed, Mar 20, 2013 at 3:47 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Wed, Mar 20, 2013 at 3:43 PM, Raj Ayyampalayam <raj76@uga.edu> wrote:
Hi Guys,
Thanks for the quick response. I installed the latest blast datatypes from the toolshed and that fixed the issue.
Great - thanks for letting us know so promptly.
Peter, can you also fix the $outfile.extra_files_path to $outfile.files_path on line 5 in the makedb wrapper xml file.
What do you mean 'fix' it? It should be using extra_files_path shouldn't it? This is a composite datatype in Galaxy.
Are you perhaps running jobs as real user? That might explain when this difference is important: http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-April/009579.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-March/013889.html Thanks, Peter